Hb_000855_020

Information

Type -
Description -
Location Contig855: 73295-80214
Sequence    

Annotation

kegg
ID mdm:103419953
description ankyrin repeat-containing protein At5g02620-like
nr
ID XP_011020233.1
description PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A067KMI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06771 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60531: 73296-75960 , PASA_asmbl_60532: 75988-78994
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000855_020 0.0 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
2 Hb_001619_150 0.0746821629 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 [Jatropha curcas]
3 Hb_007765_080 0.0769030962 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
4 Hb_000671_070 0.0773451757 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
5 Hb_004912_030 0.078785884 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
6 Hb_089140_050 0.0788020623 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
7 Hb_002835_230 0.0818087903 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_009503_030 0.0825695637 - - protein dimerization, putative [Ricinus communis]
9 Hb_000107_400 0.0826529611 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
10 Hb_116349_030 0.0833562835 - - PREDICTED: zinc finger MYND domain-containing protein 15 isoform X3 [Jatropha curcas]
11 Hb_138596_010 0.0842147614 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
12 Hb_000429_220 0.0850513866 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
13 Hb_144831_010 0.0852473814 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
14 Hb_004453_110 0.0858781532 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
15 Hb_011618_080 0.0864425282 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
16 Hb_003785_040 0.086843562 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
17 Hb_000003_290 0.0869311766 - - hypothetical protein JCGZ_24486 [Jatropha curcas]
18 Hb_027760_080 0.0876017938 - - cytochrome P450, putative [Ricinus communis]
19 Hb_000922_020 0.0887186591 - - protein binding protein, putative [Ricinus communis]
20 Hb_004785_100 0.0890326144 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000855_020 Hb_000855_020 Hb_001619_150 Hb_001619_150 Hb_000855_020--Hb_001619_150 Hb_007765_080 Hb_007765_080 Hb_000855_020--Hb_007765_080 Hb_000671_070 Hb_000671_070 Hb_000855_020--Hb_000671_070 Hb_004912_030 Hb_004912_030 Hb_000855_020--Hb_004912_030 Hb_089140_050 Hb_089140_050 Hb_000855_020--Hb_089140_050 Hb_002835_230 Hb_002835_230 Hb_000855_020--Hb_002835_230 Hb_001619_150--Hb_007765_080 Hb_002092_080 Hb_002092_080 Hb_001619_150--Hb_002092_080 Hb_028308_010 Hb_028308_010 Hb_001619_150--Hb_028308_010 Hb_011618_080 Hb_011618_080 Hb_001619_150--Hb_011618_080 Hb_001619_150--Hb_004912_030 Hb_116349_030 Hb_116349_030 Hb_007765_080--Hb_116349_030 Hb_000574_440 Hb_000574_440 Hb_007765_080--Hb_000574_440 Hb_000260_440 Hb_000260_440 Hb_007765_080--Hb_000260_440 Hb_007765_080--Hb_028308_010 Hb_001191_120 Hb_001191_120 Hb_000671_070--Hb_001191_120 Hb_000025_320 Hb_000025_320 Hb_000671_070--Hb_000025_320 Hb_000243_210 Hb_000243_210 Hb_000671_070--Hb_000243_210 Hb_000914_120 Hb_000914_120 Hb_000671_070--Hb_000914_120 Hb_000671_070--Hb_089140_050 Hb_006420_040 Hb_006420_040 Hb_000671_070--Hb_006420_040 Hb_000130_420 Hb_000130_420 Hb_004912_030--Hb_000130_420 Hb_001005_030 Hb_001005_030 Hb_004912_030--Hb_001005_030 Hb_004912_030--Hb_002092_080 Hb_004912_030--Hb_000243_210 Hb_000362_170 Hb_000362_170 Hb_004912_030--Hb_000362_170 Hb_053079_020 Hb_053079_020 Hb_004912_030--Hb_053079_020 Hb_004453_110 Hb_004453_110 Hb_089140_050--Hb_004453_110 Hb_000429_220 Hb_000429_220 Hb_089140_050--Hb_000429_220 Hb_000261_030 Hb_000261_030 Hb_089140_050--Hb_000261_030 Hb_011344_020 Hb_011344_020 Hb_089140_050--Hb_011344_020 Hb_000035_410 Hb_000035_410 Hb_089140_050--Hb_000035_410 Hb_004785_100 Hb_004785_100 Hb_002835_230--Hb_004785_100 Hb_002078_110 Hb_002078_110 Hb_002835_230--Hb_002078_110 Hb_131646_010 Hb_131646_010 Hb_002835_230--Hb_131646_010 Hb_002686_250 Hb_002686_250 Hb_002835_230--Hb_002686_250 Hb_002823_030 Hb_002823_030 Hb_002835_230--Hb_002823_030 Hb_014361_070 Hb_014361_070 Hb_002835_230--Hb_014361_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7929 16.2535 10.0454 10.6831 21.1562 11.2328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.00273 8.39165 8.2468 7.6957 12.5166

CAGE analysis