Hb_000856_050

Information

Type -
Description -
Location Contig856: 39372-43957
Sequence    

Annotation

kegg
ID rcu:RCOM_1513150
description HIPL1 protein precursor, putative
nr
ID XP_012080177.1
description PREDICTED: HIPL1 protein-like [Jatropha curcas]
swissprot
ID Q9SSG3
description HIPL1 protein OS=Arabidopsis thaliana GN=HIPL1 PE=1 SV=2
trembl
ID A0A067KG07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11561 PE=4 SV=1
Gene Ontology
ID GO:0016901
description hipl1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_050 0.0 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
2 Hb_030944_010 0.1870543715 - - PREDICTED: uncharacterized protein LOC105633455 [Jatropha curcas]
3 Hb_105660_010 0.1990544019 - - PREDICTED: potassium channel AKT6-like [Jatropha curcas]
4 Hb_000172_050 0.2141758151 - - PREDICTED: uncharacterized protein LOC105650611 [Jatropha curcas]
5 Hb_004453_180 0.2157559263 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
6 Hb_005539_260 0.2162024761 - - PREDICTED: potassium transporter 6 [Jatropha curcas]
7 Hb_006925_070 0.2245257043 - - hypothetical protein JCGZ_20652 [Jatropha curcas]
8 Hb_000608_020 0.2264934596 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
9 Hb_007676_020 0.2272385616 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
10 Hb_000059_300 0.2344369816 - - caspase, putative [Ricinus communis]
11 Hb_000111_480 0.2405490216 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
12 Hb_000853_100 0.2409301795 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
13 Hb_001341_200 0.2418937087 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
14 Hb_139139_010 0.2427245288 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
15 Hb_000554_030 0.24688574 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
16 Hb_008468_030 0.2485462288 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
17 Hb_001170_010 0.2486489055 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_023344_060 0.2486922018 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
19 Hb_000429_110 0.2493478555 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
20 Hb_001355_070 0.2501784624 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_000856_050 Hb_000856_050 Hb_030944_010 Hb_030944_010 Hb_000856_050--Hb_030944_010 Hb_105660_010 Hb_105660_010 Hb_000856_050--Hb_105660_010 Hb_000172_050 Hb_000172_050 Hb_000856_050--Hb_000172_050 Hb_004453_180 Hb_004453_180 Hb_000856_050--Hb_004453_180 Hb_005539_260 Hb_005539_260 Hb_000856_050--Hb_005539_260 Hb_006925_070 Hb_006925_070 Hb_000856_050--Hb_006925_070 Hb_004195_090 Hb_004195_090 Hb_030944_010--Hb_004195_090 Hb_000059_300 Hb_000059_300 Hb_030944_010--Hb_000059_300 Hb_000057_080 Hb_000057_080 Hb_030944_010--Hb_000057_080 Hb_000832_280 Hb_000832_280 Hb_030944_010--Hb_000832_280 Hb_001341_200 Hb_001341_200 Hb_030944_010--Hb_001341_200 Hb_020967_010 Hb_020967_010 Hb_105660_010--Hb_020967_010 Hb_105660_010--Hb_004453_180 Hb_001357_030 Hb_001357_030 Hb_105660_010--Hb_001357_030 Hb_186647_010 Hb_186647_010 Hb_105660_010--Hb_186647_010 Hb_105660_010--Hb_000172_050 Hb_006550_010 Hb_006550_010 Hb_105660_010--Hb_006550_010 Hb_000853_100 Hb_000853_100 Hb_000172_050--Hb_000853_100 Hb_006615_160 Hb_006615_160 Hb_000172_050--Hb_006615_160 Hb_001355_070 Hb_001355_070 Hb_000172_050--Hb_001355_070 Hb_017857_010 Hb_017857_010 Hb_000172_050--Hb_017857_010 Hb_014720_050 Hb_014720_050 Hb_000172_050--Hb_014720_050 Hb_000094_120 Hb_000094_120 Hb_000172_050--Hb_000094_120 Hb_004453_180--Hb_020967_010 Hb_103788_010 Hb_103788_010 Hb_004453_180--Hb_103788_010 Hb_012760_060 Hb_012760_060 Hb_004453_180--Hb_012760_060 Hb_003637_020 Hb_003637_020 Hb_004453_180--Hb_003637_020 Hb_000270_770 Hb_000270_770 Hb_004453_180--Hb_000270_770 Hb_005539_260--Hb_000094_120 Hb_001486_200 Hb_001486_200 Hb_005539_260--Hb_001486_200 Hb_023344_060 Hb_023344_060 Hb_005539_260--Hb_023344_060 Hb_002027_030 Hb_002027_030 Hb_005539_260--Hb_002027_030 Hb_000554_030 Hb_000554_030 Hb_005539_260--Hb_000554_030 Hb_000913_080 Hb_000913_080 Hb_005539_260--Hb_000913_080 Hb_006925_070--Hb_000853_100 Hb_000608_020 Hb_000608_020 Hb_006925_070--Hb_000608_020 Hb_006925_070--Hb_020967_010 Hb_006916_200 Hb_006916_200 Hb_006925_070--Hb_006916_200 Hb_006925_070--Hb_004453_180 Hb_001377_500 Hb_001377_500 Hb_006925_070--Hb_001377_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00922359 0.312213 0.0770873 0.324406 0.0178697 0.01761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0209529 0.0659471 0.125274 0.209764 0

CAGE analysis