Hb_000856_100

Information

Type -
Description -
Location Contig856: 77723-81921
Sequence    

Annotation

kegg
ID rcu:RCOM_1513190
description hypothetical protein
nr
ID XP_012080182.1
description PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID A0A067K849
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11564 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein nuclear fusion defective 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60569: 77639-81839 , PASA_asmbl_60570: 78504-81839
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_100 0.0 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
2 Hb_098315_100 0.0636953488 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
3 Hb_009193_130 0.0856414932 - - hypothetical protein RCOM_1620550 [Ricinus communis]
4 Hb_002506_110 0.1032441506 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
5 Hb_019654_070 0.1066319594 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
6 Hb_005271_030 0.1085510748 - - copper-transporting atpase p-type, putative [Ricinus communis]
7 Hb_000155_080 0.108720911 - - guanylate-binding family protein [Populus trichocarpa]
8 Hb_000172_610 0.11046589 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
9 Hb_001846_080 0.1128244824 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
10 Hb_000033_060 0.1137351705 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
11 Hb_000565_020 0.1151563457 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
12 Hb_029464_010 0.115581561 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
13 Hb_007158_030 0.121874234 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_000466_060 0.1227506361 - - phosphofructokinase [Hevea brasiliensis]
15 Hb_002627_060 0.1229244936 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
16 Hb_077219_010 0.1236813958 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012807_120 0.1256581902 - - metal ion binding protein, putative [Ricinus communis]
18 Hb_000483_370 0.1259747119 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000376_150 0.1271403444 - - O-acyltransferase WSD1 [Gossypium arboreum]
20 Hb_000172_530 0.1275611688 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000856_100 Hb_000856_100 Hb_098315_100 Hb_098315_100 Hb_000856_100--Hb_098315_100 Hb_009193_130 Hb_009193_130 Hb_000856_100--Hb_009193_130 Hb_002506_110 Hb_002506_110 Hb_000856_100--Hb_002506_110 Hb_019654_070 Hb_019654_070 Hb_000856_100--Hb_019654_070 Hb_005271_030 Hb_005271_030 Hb_000856_100--Hb_005271_030 Hb_000155_080 Hb_000155_080 Hb_000856_100--Hb_000155_080 Hb_098315_100--Hb_019654_070 Hb_000376_150 Hb_000376_150 Hb_098315_100--Hb_000376_150 Hb_000365_350 Hb_000365_350 Hb_098315_100--Hb_000365_350 Hb_098315_100--Hb_009193_130 Hb_098315_100--Hb_000155_080 Hb_029464_010 Hb_029464_010 Hb_009193_130--Hb_029464_010 Hb_007158_030 Hb_007158_030 Hb_009193_130--Hb_007158_030 Hb_009193_130--Hb_005271_030 Hb_009193_130--Hb_002506_110 Hb_002506_110--Hb_000376_150 Hb_002506_110--Hb_098315_100 Hb_002506_110--Hb_005271_030 Hb_002506_110--Hb_007158_030 Hb_019654_070--Hb_000155_080 Hb_003656_030 Hb_003656_030 Hb_019654_070--Hb_003656_030 Hb_000085_340 Hb_000085_340 Hb_019654_070--Hb_000085_340 Hb_005488_100 Hb_005488_100 Hb_019654_070--Hb_005488_100 Hb_007178_010 Hb_007178_010 Hb_019654_070--Hb_007178_010 Hb_005271_030--Hb_029464_010 Hb_001146_070 Hb_001146_070 Hb_005271_030--Hb_001146_070 Hb_005271_030--Hb_007158_030 Hb_001017_100 Hb_001017_100 Hb_005271_030--Hb_001017_100 Hb_000172_610 Hb_000172_610 Hb_000155_080--Hb_000172_610 Hb_002627_060 Hb_002627_060 Hb_000155_080--Hb_002627_060 Hb_000155_080--Hb_009193_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
237.57 7.82937 1.49931 9.62489 197.877 293.607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.432 29.25 53.8185 21.9485 3.19677

CAGE analysis