Hb_000856_160

Information

Type -
Description -
Location Contig856: 123823-124505
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_160 0.0 - - -
2 Hb_003659_020 0.1507554832 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
3 Hb_008035_050 0.1557982731 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
4 Hb_139691_010 0.1655711009 - - -
5 Hb_000392_290 0.2144108595 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_001789_170 0.2568898384 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
7 Hb_002999_040 0.2650702422 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002391_100 0.2700096403 - - hypothetical protein POPTR_0007s09360g [Populus trichocarpa]
9 Hb_001818_030 0.2825332594 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
10 Hb_002498_130 0.2900455817 - - hypothetical protein POPTR_0004s00980g [Populus trichocarpa]
11 Hb_000781_050 0.2966617173 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_001221_280 0.3035896599 - - -
13 Hb_011356_020 0.3145649467 - - -
14 Hb_001008_140 0.3212506142 - - -
15 Hb_000011_090 0.3256307137 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
16 Hb_010515_030 0.3369973916 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
17 Hb_003799_020 0.3503366619 - - hypothetical protein VITISV_003261 [Vitis vinifera]
18 Hb_000010_450 0.351378359 - - purine permease, putative [Ricinus communis]
19 Hb_006569_070 0.3556056334 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_024247_020 0.3792294258 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]

Gene co-expression network

sample Hb_000856_160 Hb_000856_160 Hb_003659_020 Hb_003659_020 Hb_000856_160--Hb_003659_020 Hb_008035_050 Hb_008035_050 Hb_000856_160--Hb_008035_050 Hb_139691_010 Hb_139691_010 Hb_000856_160--Hb_139691_010 Hb_000392_290 Hb_000392_290 Hb_000856_160--Hb_000392_290 Hb_001789_170 Hb_001789_170 Hb_000856_160--Hb_001789_170 Hb_002999_040 Hb_002999_040 Hb_000856_160--Hb_002999_040 Hb_003659_020--Hb_008035_050 Hb_003659_020--Hb_139691_010 Hb_003659_020--Hb_000392_290 Hb_003659_020--Hb_001789_170 Hb_002498_130 Hb_002498_130 Hb_003659_020--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_003659_020--Hb_000781_050 Hb_008035_050--Hb_139691_010 Hb_008035_050--Hb_000392_290 Hb_008035_050--Hb_001789_170 Hb_008035_050--Hb_002498_130 Hb_008035_050--Hb_000781_050 Hb_139691_010--Hb_000392_290 Hb_139691_010--Hb_001789_170 Hb_139691_010--Hb_002498_130 Hb_139691_010--Hb_000781_050 Hb_000392_290--Hb_001789_170 Hb_000392_290--Hb_002498_130 Hb_000392_290--Hb_000781_050 Hb_001789_170--Hb_002498_130 Hb_001789_170--Hb_000781_050 Hb_011356_020 Hb_011356_020 Hb_001789_170--Hb_011356_020 Hb_001818_030 Hb_001818_030 Hb_002999_040--Hb_001818_030 Hb_003581_180 Hb_003581_180 Hb_002999_040--Hb_003581_180 Hb_152362_010 Hb_152362_010 Hb_002999_040--Hb_152362_010 Hb_000925_040 Hb_000925_040 Hb_002999_040--Hb_000925_040 Hb_002999_040--Hb_003659_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.688704 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.680471 0 0

CAGE analysis