Hb_000856_180

Information

Type -
Description -
Location Contig856: 150684-156956
Sequence    

Annotation

kegg
ID rcu:RCOM_1513350
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID AJP60195.1
description calcium-dependent protein kinase [Hevea brasiliensis]
swissprot
ID Q9SSF8
description Calcium-dependent protein kinase 30 OS=Arabidopsis thaliana GN=CPK30 PE=1 SV=1
trembl
ID A0A0C5K5J4
description Cdpk3 protein OS=Hevea brasiliensis GN=cdpk3 PE=2 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60580: 154663-156882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_180 0.0 - - calcium-dependent protein kinase [Hevea brasiliensis]
2 Hb_003071_020 0.052114681 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
3 Hb_032808_030 0.100713715 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
4 Hb_002046_020 0.101890364 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
5 Hb_000905_170 0.1019408865 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
6 Hb_000236_410 0.104698625 - - Paramyosin, putative [Ricinus communis]
7 Hb_000009_330 0.1050596285 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
8 Hb_006922_010 0.105180041 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
9 Hb_001840_090 0.1093738836 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
10 Hb_001894_120 0.109764634 - - nucleoredoxin, putative [Ricinus communis]
11 Hb_001055_030 0.1100332435 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
12 Hb_003211_010 0.1148451488 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
13 Hb_009627_030 0.1153955926 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
14 Hb_000227_060 0.1177158612 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
15 Hb_000140_480 0.1199768117 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
16 Hb_002693_060 0.1215493305 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_000941_130 0.1226351727 - - gamma-tubulin complex component, putative [Ricinus communis]
18 Hb_093084_070 0.1229328928 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
19 Hb_004143_040 0.1230251502 - - argininosuccinate lyase, putative [Ricinus communis]
20 Hb_000940_200 0.1230467873 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]

Gene co-expression network

sample Hb_000856_180 Hb_000856_180 Hb_003071_020 Hb_003071_020 Hb_000856_180--Hb_003071_020 Hb_032808_030 Hb_032808_030 Hb_000856_180--Hb_032808_030 Hb_002046_020 Hb_002046_020 Hb_000856_180--Hb_002046_020 Hb_000905_170 Hb_000905_170 Hb_000856_180--Hb_000905_170 Hb_000236_410 Hb_000236_410 Hb_000856_180--Hb_000236_410 Hb_000009_330 Hb_000009_330 Hb_000856_180--Hb_000009_330 Hb_006922_010 Hb_006922_010 Hb_003071_020--Hb_006922_010 Hb_003071_020--Hb_000236_410 Hb_003071_020--Hb_002046_020 Hb_001019_180 Hb_001019_180 Hb_003071_020--Hb_001019_180 Hb_001840_090 Hb_001840_090 Hb_003071_020--Hb_001840_090 Hb_032808_030--Hb_000236_410 Hb_000213_120 Hb_000213_120 Hb_032808_030--Hb_000213_120 Hb_000925_140 Hb_000925_140 Hb_032808_030--Hb_000925_140 Hb_002662_020 Hb_002662_020 Hb_032808_030--Hb_002662_020 Hb_000105_040 Hb_000105_040 Hb_032808_030--Hb_000105_040 Hb_001105_160 Hb_001105_160 Hb_032808_030--Hb_001105_160 Hb_000487_380 Hb_000487_380 Hb_002046_020--Hb_000487_380 Hb_002046_020--Hb_000236_410 Hb_000941_130 Hb_000941_130 Hb_002046_020--Hb_000941_130 Hb_000025_280 Hb_000025_280 Hb_002046_020--Hb_000025_280 Hb_003078_020 Hb_003078_020 Hb_002046_020--Hb_003078_020 Hb_000227_060 Hb_000227_060 Hb_000905_170--Hb_000227_060 Hb_049436_010 Hb_049436_010 Hb_000905_170--Hb_049436_010 Hb_011930_070 Hb_011930_070 Hb_000905_170--Hb_011930_070 Hb_000905_170--Hb_003071_020 Hb_000905_170--Hb_000009_330 Hb_144744_010 Hb_144744_010 Hb_000236_410--Hb_144744_010 Hb_093084_070 Hb_093084_070 Hb_000236_410--Hb_093084_070 Hb_010712_090 Hb_010712_090 Hb_000236_410--Hb_010712_090 Hb_001055_030 Hb_001055_030 Hb_000236_410--Hb_001055_030 Hb_001935_140 Hb_001935_140 Hb_000236_410--Hb_001935_140 Hb_000059_020 Hb_000059_020 Hb_000009_330--Hb_000059_020 Hb_004994_090 Hb_004994_090 Hb_000009_330--Hb_004994_090 Hb_000169_170 Hb_000169_170 Hb_000009_330--Hb_000169_170 Hb_000862_040 Hb_000862_040 Hb_000009_330--Hb_000862_040 Hb_000009_330--Hb_000236_410 Hb_007054_040 Hb_007054_040 Hb_000009_330--Hb_007054_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.72327 14.6967 3.28908 7.68259 4.30258 7.36032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.45087 4.61421 6.36802 10.9884 2.14343

CAGE analysis