Hb_000856_200

Information

Type -
Description -
Location Contig856: 172691-179966
Sequence    

Annotation

kegg
ID cit:102610387
description ATPase 11, plasma membrane-type-like
nr
ID KHG12451.1
description ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
swissprot
ID Q9SU58
description ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=2 SV=2
trembl
ID A0A0B0NMZ9
description ATPase 4, plasma membrane-type-like protein OS=Gossypium arboreum GN=F383_16606 PE=4 SV=1
Gene Ontology
ID GO:0016021
description atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60585: 172692-173868 , PASA_asmbl_60587: 178019-178813 , PASA_asmbl_60588: 178818-179362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_200 0.0 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
2 Hb_010222_040 0.0729788145 - - PREDICTED: kinesin-2 [Jatropha curcas]
3 Hb_010557_020 0.0759826283 - - Mlo protein [Hevea brasiliensis]
4 Hb_000290_030 0.0821574542 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
5 Hb_000473_100 0.0840724167 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
6 Hb_001046_030 0.0910661115 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_144449_010 0.0946140885 - - Potassium transporter, putative [Ricinus communis]
8 Hb_001417_060 0.0965962785 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
9 Hb_000941_090 0.0977401386 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
10 Hb_000868_130 0.1001355283 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
11 Hb_003454_050 0.102861093 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
12 Hb_003266_090 0.1057059142 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
13 Hb_001946_200 0.1058929466 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
14 Hb_005365_010 0.1078476415 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
15 Hb_003266_010 0.1081423512 - - hypothetical protein JCGZ_21945 [Jatropha curcas]
16 Hb_000659_040 0.1087664157 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
17 Hb_000977_030 0.1095656332 - - unnamed protein product [Vitis vinifera]
18 Hb_000318_010 0.1109106392 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
19 Hb_000162_200 0.111188836 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
20 Hb_017358_020 0.1113276498 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]

Gene co-expression network

sample Hb_000856_200 Hb_000856_200 Hb_010222_040 Hb_010222_040 Hb_000856_200--Hb_010222_040 Hb_010557_020 Hb_010557_020 Hb_000856_200--Hb_010557_020 Hb_000290_030 Hb_000290_030 Hb_000856_200--Hb_000290_030 Hb_000473_100 Hb_000473_100 Hb_000856_200--Hb_000473_100 Hb_001046_030 Hb_001046_030 Hb_000856_200--Hb_001046_030 Hb_144449_010 Hb_144449_010 Hb_000856_200--Hb_144449_010 Hb_010222_040--Hb_010557_020 Hb_010222_040--Hb_000290_030 Hb_010222_040--Hb_144449_010 Hb_001318_100 Hb_001318_100 Hb_010222_040--Hb_001318_100 Hb_000333_030 Hb_000333_030 Hb_010222_040--Hb_000333_030 Hb_010557_020--Hb_000290_030 Hb_010557_020--Hb_144449_010 Hb_010557_020--Hb_000473_100 Hb_000162_200 Hb_000162_200 Hb_010557_020--Hb_000162_200 Hb_000977_030 Hb_000977_030 Hb_000290_030--Hb_000977_030 Hb_002724_010 Hb_002724_010 Hb_000290_030--Hb_002724_010 Hb_000160_250 Hb_000160_250 Hb_000290_030--Hb_000160_250 Hb_000290_030--Hb_000473_100 Hb_000868_130 Hb_000868_130 Hb_000473_100--Hb_000868_130 Hb_000473_100--Hb_144449_010 Hb_002902_040 Hb_002902_040 Hb_000473_100--Hb_002902_040 Hb_000069_540 Hb_000069_540 Hb_000473_100--Hb_000069_540 Hb_001269_400 Hb_001269_400 Hb_000473_100--Hb_001269_400 Hb_017358_020 Hb_017358_020 Hb_001046_030--Hb_017358_020 Hb_001417_060 Hb_001417_060 Hb_001046_030--Hb_001417_060 Hb_001046_030--Hb_000868_130 Hb_003266_010 Hb_003266_010 Hb_001046_030--Hb_003266_010 Hb_032695_010 Hb_032695_010 Hb_001046_030--Hb_032695_010 Hb_144449_010--Hb_003266_010 Hb_004607_160 Hb_004607_160 Hb_144449_010--Hb_004607_160 Hb_152980_020 Hb_152980_020 Hb_144449_010--Hb_152980_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.273875 39.1642 70.0545 103.383 1.54455 1.69511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.776862 1.37204 0.103635 27.6533 92.8507

CAGE analysis