Hb_000856_260

Information

Type transcription factor
Description TF Family: HB
Location Contig856: 239476-241466
Sequence    

Annotation

kegg
ID pop:POPTR_0015s07640g
description POPTRDRAFT_807937; hypothetical protein
nr
ID XP_002321530.2
description hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
swissprot
ID Q02283
description Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1
trembl
ID A9PHH0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s07640g PE=2 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein hat5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60591: 239471-241821
cDNA
(Sanger)
(ID:Location)		 046_K16.ab1: 241491-241818

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_260 0.0 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
2 Hb_000898_050 0.0889913383 - - -
3 Hb_000224_120 0.0968419759 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
4 Hb_006429_010 0.1023984298 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
5 Hb_180301_010 0.1032593956 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
6 Hb_000635_150 0.1049893102 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
7 Hb_074979_020 0.1054808878 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000985_060 0.1072016547 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
9 Hb_003092_030 0.1077553808 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
10 Hb_006641_010 0.1092869673 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
11 Hb_003996_020 0.1098409524 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_037887_010 0.1112066467 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
13 Hb_000108_140 0.1120571594 - - hypothetical protein CICLE_v10019690mg [Citrus clementina]
14 Hb_002759_060 0.1122503675 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
15 Hb_002005_020 0.1135609057 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001242_110 0.1159341259 - - 40S ribosomal protein S18, putative [Ricinus communis]
17 Hb_064441_010 0.1184314627 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
18 Hb_000479_190 0.1185782851 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001584_190 0.1193437368 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
20 Hb_001153_060 0.1204779745 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000856_260 Hb_000856_260 Hb_000898_050 Hb_000898_050 Hb_000856_260--Hb_000898_050 Hb_000224_120 Hb_000224_120 Hb_000856_260--Hb_000224_120 Hb_006429_010 Hb_006429_010 Hb_000856_260--Hb_006429_010 Hb_180301_010 Hb_180301_010 Hb_000856_260--Hb_180301_010 Hb_000635_150 Hb_000635_150 Hb_000856_260--Hb_000635_150 Hb_074979_020 Hb_074979_020 Hb_000856_260--Hb_074979_020 Hb_003092_030 Hb_003092_030 Hb_000898_050--Hb_003092_030 Hb_037887_010 Hb_037887_010 Hb_000898_050--Hb_037887_010 Hb_001114_130 Hb_001114_130 Hb_000898_050--Hb_001114_130 Hb_006198_080 Hb_006198_080 Hb_000898_050--Hb_006198_080 Hb_000898_050--Hb_006429_010 Hb_011457_090 Hb_011457_090 Hb_000224_120--Hb_011457_090 Hb_004336_050 Hb_004336_050 Hb_000224_120--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_000224_120--Hb_000975_110 Hb_004374_140 Hb_004374_140 Hb_000224_120--Hb_004374_140 Hb_001307_090 Hb_001307_090 Hb_000224_120--Hb_001307_090 Hb_000963_180 Hb_000963_180 Hb_000224_120--Hb_000963_180 Hb_000479_190 Hb_000479_190 Hb_006429_010--Hb_000479_190 Hb_006429_010--Hb_003092_030 Hb_001205_150 Hb_001205_150 Hb_006429_010--Hb_001205_150 Hb_004218_110 Hb_004218_110 Hb_006429_010--Hb_004218_110 Hb_002759_060 Hb_002759_060 Hb_006429_010--Hb_002759_060 Hb_006429_010--Hb_037887_010 Hb_004032_100 Hb_004032_100 Hb_180301_010--Hb_004032_100 Hb_180301_010--Hb_004336_050 Hb_000172_030 Hb_000172_030 Hb_180301_010--Hb_000172_030 Hb_180301_010--Hb_004374_140 Hb_000751_130 Hb_000751_130 Hb_180301_010--Hb_000751_130 Hb_007735_030 Hb_007735_030 Hb_180301_010--Hb_007735_030 Hb_000985_060 Hb_000985_060 Hb_000635_150--Hb_000985_060 Hb_001519_050 Hb_001519_050 Hb_000635_150--Hb_001519_050 Hb_005092_060 Hb_005092_060 Hb_000635_150--Hb_005092_060 Hb_000125_190 Hb_000125_190 Hb_000635_150--Hb_000125_190 Hb_000635_150--Hb_002759_060 Hb_002005_020 Hb_002005_020 Hb_000635_150--Hb_002005_020 Hb_006641_010 Hb_006641_010 Hb_074979_020--Hb_006641_010 Hb_012675_070 Hb_012675_070 Hb_074979_020--Hb_012675_070 Hb_001242_110 Hb_001242_110 Hb_074979_020--Hb_001242_110 Hb_074979_020--Hb_037887_010 Hb_001155_030 Hb_001155_030 Hb_074979_020--Hb_001155_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.0827 16.5497 6.21834 46.0964 21.1517 63.9483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.8591 74.8051 85.9726 41.7647 13.7769

CAGE analysis