Hb_000856_270

Information

Type -
Description -
Location Contig856: 246725-249677
Sequence    

Annotation

kegg
ID rcu:RCOM_1513680
description nitrate transporter, putative
nr
ID XP_012080203.1
description PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
swissprot
ID Q8H157
description Protein NRT1/ PTR FAMILY 4.6 OS=Arabidopsis thaliana GN=NPF4.6 PE=1 SV=1
trembl
ID A0A067GKR9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008106mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60592: 246898-247358 , PASA_asmbl_60593: 246705-248254 , PASA_asmbl_60595: 248453-249011 , PASA_asmbl_60596: 249104-249721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_270 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
2 Hb_001140_190 0.1497345158 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
3 Hb_000243_230 0.1607316837 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000071_060 0.1740728698 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000438_160 0.1786095102 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004007_140 0.1786272083 - - PREDICTED: cyclin-D5-1-like isoform X1 [Jatropha curcas]
7 Hb_001491_020 0.1844915426 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_001105_120 0.1855778595 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
9 Hb_004096_230 0.186844338 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
10 Hb_001227_070 0.1893480853 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
11 Hb_001817_040 0.1899069461 - - myosin XI, putative [Ricinus communis]
12 Hb_000417_090 0.1922625365 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
13 Hb_000847_130 0.1924590198 - - PREDICTED: fimbrin-2 [Jatropha curcas]
14 Hb_024071_030 0.1927886454 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
15 Hb_132840_190 0.1928982802 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
16 Hb_009663_020 0.1966496812 - - -
17 Hb_007120_120 0.197057594 - - protein binding protein, putative [Ricinus communis]
18 Hb_001504_210 0.1982280355 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
19 Hb_008195_060 0.1983575633 transcription factor TF Family: NAC NAC transcription factor 018 [Jatropha curcas]
20 Hb_005276_140 0.1992027125 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000856_270 Hb_000856_270 Hb_001140_190 Hb_001140_190 Hb_000856_270--Hb_001140_190 Hb_000243_230 Hb_000243_230 Hb_000856_270--Hb_000243_230 Hb_000071_060 Hb_000071_060 Hb_000856_270--Hb_000071_060 Hb_000438_160 Hb_000438_160 Hb_000856_270--Hb_000438_160 Hb_004007_140 Hb_004007_140 Hb_000856_270--Hb_004007_140 Hb_001491_020 Hb_001491_020 Hb_000856_270--Hb_001491_020 Hb_001511_210 Hb_001511_210 Hb_001140_190--Hb_001511_210 Hb_001140_190--Hb_000438_160 Hb_005276_140 Hb_005276_140 Hb_001140_190--Hb_005276_140 Hb_001140_190--Hb_000071_060 Hb_000331_170 Hb_000331_170 Hb_001140_190--Hb_000331_170 Hb_001817_040 Hb_001817_040 Hb_001140_190--Hb_001817_040 Hb_000243_230--Hb_000071_060 Hb_008686_040 Hb_008686_040 Hb_000243_230--Hb_008686_040 Hb_000243_230--Hb_001140_190 Hb_001662_120 Hb_001662_120 Hb_000243_230--Hb_001662_120 Hb_000072_230 Hb_000072_230 Hb_000243_230--Hb_000072_230 Hb_000243_230--Hb_000438_160 Hb_000071_060--Hb_008686_040 Hb_000071_060--Hb_000331_170 Hb_000073_040 Hb_000073_040 Hb_000071_060--Hb_000073_040 Hb_000375_220 Hb_000375_220 Hb_000071_060--Hb_000375_220 Hb_000071_060--Hb_000072_230 Hb_000017_200 Hb_000017_200 Hb_000438_160--Hb_000017_200 Hb_000438_160--Hb_000331_170 Hb_000438_160--Hb_000071_060 Hb_000932_110 Hb_000932_110 Hb_000438_160--Hb_000932_110 Hb_000438_160--Hb_001491_020 Hb_001504_210 Hb_001504_210 Hb_004007_140--Hb_001504_210 Hb_004007_140--Hb_001817_040 Hb_004007_140--Hb_000438_160 Hb_004007_140--Hb_001140_190 Hb_000847_130 Hb_000847_130 Hb_004007_140--Hb_000847_130 Hb_004007_140--Hb_001491_020 Hb_001544_050 Hb_001544_050 Hb_001491_020--Hb_001544_050 Hb_001491_020--Hb_001504_210 Hb_000465_410 Hb_000465_410 Hb_001491_020--Hb_000465_410 Hb_001491_020--Hb_000847_130 Hb_001491_020--Hb_001817_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0116364 0 1.02064 0.827605 0 0.0227961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0264743 0.0208295 0.118002 0 0.613467

CAGE analysis