Hb_000856_300

Information

Type -
Description -
Location Contig856: 267684-278131
Sequence    

Annotation

kegg
ID rcu:RCOM_1513760
description nuclear protein zap, putative
nr
ID XP_012080214.1
description PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
swissprot
ID P0CB49
description YLP motif-containing protein 1 OS=Rattus norvegicus GN=Ylpm1 PE=1 SV=1
trembl
ID A0A067K546
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11588 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60600: 267931-274441 , PASA_asmbl_60601: 274325-278097 , PASA_asmbl_60602: 271482-271925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_300 0.0 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
2 Hb_008948_140 0.0697003268 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
3 Hb_000926_150 0.0713645605 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
4 Hb_000580_050 0.0755194034 - - -
5 Hb_001008_100 0.0784977765 - - JHL25H03.10 [Jatropha curcas]
6 Hb_000373_170 0.0863664633 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
7 Hb_000787_200 0.0881014719 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_001341_160 0.0897434412 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
9 Hb_003142_040 0.0913180823 - - Sf3a3 [Gossypium arboreum]
10 Hb_000220_120 0.0913731778 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
11 Hb_004223_160 0.0917153876 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
12 Hb_012940_040 0.0924412691 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
13 Hb_000665_260 0.0928962165 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
14 Hb_002812_010 0.0931735096 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
15 Hb_000617_190 0.0932835414 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
16 Hb_012539_110 0.0944205276 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
17 Hb_000661_120 0.0948972313 - - cap binding protein, putative [Ricinus communis]
18 Hb_000172_340 0.094994607 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
19 Hb_001257_100 0.0957487322 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
20 Hb_000297_030 0.0961919227 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000856_300 Hb_000856_300 Hb_008948_140 Hb_008948_140 Hb_000856_300--Hb_008948_140 Hb_000926_150 Hb_000926_150 Hb_000856_300--Hb_000926_150 Hb_000580_050 Hb_000580_050 Hb_000856_300--Hb_000580_050 Hb_001008_100 Hb_001008_100 Hb_000856_300--Hb_001008_100 Hb_000373_170 Hb_000373_170 Hb_000856_300--Hb_000373_170 Hb_000787_200 Hb_000787_200 Hb_000856_300--Hb_000787_200 Hb_000479_240 Hb_000479_240 Hb_008948_140--Hb_000479_240 Hb_001341_160 Hb_001341_160 Hb_008948_140--Hb_001341_160 Hb_000862_040 Hb_000862_040 Hb_008948_140--Hb_000862_040 Hb_001723_010 Hb_001723_010 Hb_008948_140--Hb_001723_010 Hb_008948_140--Hb_000926_150 Hb_116349_130 Hb_116349_130 Hb_000926_150--Hb_116349_130 Hb_000035_100 Hb_000035_100 Hb_000926_150--Hb_000035_100 Hb_001257_100 Hb_001257_100 Hb_000926_150--Hb_001257_100 Hb_024650_080 Hb_024650_080 Hb_000926_150--Hb_024650_080 Hb_000926_150--Hb_000373_170 Hb_000260_780 Hb_000260_780 Hb_000580_050--Hb_000260_780 Hb_001558_040 Hb_001558_040 Hb_000580_050--Hb_001558_040 Hb_000243_300 Hb_000243_300 Hb_000580_050--Hb_000243_300 Hb_000172_340 Hb_000172_340 Hb_000580_050--Hb_000172_340 Hb_001085_110 Hb_001085_110 Hb_000580_050--Hb_001085_110 Hb_001008_100--Hb_000926_150 Hb_001008_100--Hb_008948_140 Hb_000661_120 Hb_000661_120 Hb_001008_100--Hb_000661_120 Hb_003633_090 Hb_003633_090 Hb_001008_100--Hb_003633_090 Hb_089140_040 Hb_089140_040 Hb_001008_100--Hb_089140_040 Hb_000996_020 Hb_000996_020 Hb_000373_170--Hb_000996_020 Hb_004517_020 Hb_004517_020 Hb_000373_170--Hb_004517_020 Hb_000445_060 Hb_000445_060 Hb_000373_170--Hb_000445_060 Hb_000373_170--Hb_001723_010 Hb_000373_170--Hb_000661_120 Hb_002768_050 Hb_002768_050 Hb_000373_170--Hb_002768_050 Hb_000318_150 Hb_000318_150 Hb_000787_200--Hb_000318_150 Hb_011674_040 Hb_011674_040 Hb_000787_200--Hb_011674_040 Hb_000834_230 Hb_000834_230 Hb_000787_200--Hb_000834_230 Hb_080147_050 Hb_080147_050 Hb_000787_200--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000787_200--Hb_000342_050 Hb_000270_170 Hb_000270_170 Hb_000787_200--Hb_000270_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.02293 18.0362 12.5687 12.2362 8.79884 6.37853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.09217 5.59012 2.22094 15.341 10.4871

CAGE analysis