Hb_000856_310

Information

Type -
Description -
Location Contig856: 279211-283063
Sequence    

Annotation

kegg
ID tcc:TCM_013826
description SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 1
nr
ID XP_012080206.1
description PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
swissprot
ID Q9FM19
description Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1
trembl
ID A0A067K544
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11583 PE=4 SV=1
Gene Ontology
ID GO:0005774
description hypersensitive-induced response protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60603: 278323-282977 , PASA_asmbl_60604: 278707-282992 , PASA_asmbl_60605: 278707-278983
cDNA
(Sanger)
(ID:Location)		 029_A15.ab1: 278323-282404 , 038_M14.ab1: 278323-282407

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_310 0.0 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
2 Hb_000244_220 0.0638155194 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
3 Hb_004602_040 0.077895006 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
4 Hb_005214_090 0.0787800794 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
5 Hb_000369_130 0.0793029183 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
6 Hb_017862_020 0.0797782985 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
7 Hb_000739_100 0.0801269329 - - ku P80 DNA helicase, putative [Ricinus communis]
8 Hb_123352_020 0.0804584065 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
9 Hb_000703_150 0.0806088067 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
10 Hb_000656_380 0.0812851964 - - PREDICTED: exportin-T [Jatropha curcas]
11 Hb_011218_040 0.0831390483 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
12 Hb_002111_070 0.0838537931 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
13 Hb_000123_210 0.0840328528 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
14 Hb_004429_100 0.0857624224 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
15 Hb_002255_030 0.086113619 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
16 Hb_000023_330 0.0862189226 - - RNA recognition motif-containing family protein [Populus trichocarpa]
17 Hb_004117_310 0.0863120384 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
18 Hb_002107_070 0.0867646977 - - hypothetical protein RCOM_1598630 [Ricinus communis]
19 Hb_004235_080 0.0867783007 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
20 Hb_000173_490 0.0874644566 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000856_310 Hb_000856_310 Hb_000244_220 Hb_000244_220 Hb_000856_310--Hb_000244_220 Hb_004602_040 Hb_004602_040 Hb_000856_310--Hb_004602_040 Hb_005214_090 Hb_005214_090 Hb_000856_310--Hb_005214_090 Hb_000369_130 Hb_000369_130 Hb_000856_310--Hb_000369_130 Hb_017862_020 Hb_017862_020 Hb_000856_310--Hb_017862_020 Hb_000739_100 Hb_000739_100 Hb_000856_310--Hb_000739_100 Hb_000244_220--Hb_004602_040 Hb_000046_010 Hb_000046_010 Hb_000244_220--Hb_000046_010 Hb_001912_100 Hb_001912_100 Hb_000244_220--Hb_001912_100 Hb_002163_010 Hb_002163_010 Hb_000244_220--Hb_002163_010 Hb_000327_340 Hb_000327_340 Hb_000244_220--Hb_000327_340 Hb_004602_040--Hb_001912_100 Hb_000084_120 Hb_000084_120 Hb_004602_040--Hb_000084_120 Hb_000101_240 Hb_000101_240 Hb_004602_040--Hb_000101_240 Hb_000035_290 Hb_000035_290 Hb_004602_040--Hb_000035_290 Hb_123352_020 Hb_123352_020 Hb_004602_040--Hb_123352_020 Hb_005214_090--Hb_000244_220 Hb_001575_010 Hb_001575_010 Hb_005214_090--Hb_001575_010 Hb_000627_180 Hb_000627_180 Hb_005214_090--Hb_000627_180 Hb_156850_070 Hb_156850_070 Hb_005214_090--Hb_156850_070 Hb_089140_030 Hb_089140_030 Hb_005214_090--Hb_089140_030 Hb_002107_070 Hb_002107_070 Hb_000369_130--Hb_002107_070 Hb_003058_060 Hb_003058_060 Hb_000369_130--Hb_003058_060 Hb_006355_090 Hb_006355_090 Hb_000369_130--Hb_006355_090 Hb_001821_090 Hb_001821_090 Hb_000369_130--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_000369_130--Hb_005143_030 Hb_001621_130 Hb_001621_130 Hb_000369_130--Hb_001621_130 Hb_002784_020 Hb_002784_020 Hb_017862_020--Hb_002784_020 Hb_000207_180 Hb_000207_180 Hb_017862_020--Hb_000207_180 Hb_002686_030 Hb_002686_030 Hb_017862_020--Hb_002686_030 Hb_000225_040 Hb_000225_040 Hb_017862_020--Hb_000225_040 Hb_000395_130 Hb_000395_130 Hb_017862_020--Hb_000395_130 Hb_000579_230 Hb_000579_230 Hb_017862_020--Hb_000579_230 Hb_001157_090 Hb_001157_090 Hb_000739_100--Hb_001157_090 Hb_002900_090 Hb_002900_090 Hb_000739_100--Hb_002900_090 Hb_005000_260 Hb_005000_260 Hb_000739_100--Hb_005000_260 Hb_000703_150 Hb_000703_150 Hb_000739_100--Hb_000703_150 Hb_006922_010 Hb_006922_010 Hb_000739_100--Hb_006922_010 Hb_000739_100--Hb_002686_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0764 49.84 19.3006 24.197 37.1657 51.7885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.5405 25.1363 33.7375 53.7661 18.6127

CAGE analysis