Hb_000856_320

Information

Type -
Description -
Location Contig856: 283729-285179
Sequence    

Annotation

kegg
ID rcu:RCOM_1513700
description voltage-dependent anion-selective channel, putative
nr
ID XP_012080209.1
description PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
swissprot
ID P42056
description Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2
trembl
ID A0A067K8A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11584 PE=4 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial outer membrane protein porin of 36 kda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_320 0.0 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
2 Hb_141990_020 0.1813754389 - - RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement protein; Short=MP; Contains: RecName: Full=Capsid protein; Short=CP; Contains: RecName: Full=Aspartic protease; Short=PR; Contains: RecName: Full=Reverse transcriptase; Short=RT [Petunia vein clearing virus isolate Hohn]
3 Hb_000958_100 0.1931571935 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_017098_060 0.1966898284 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Pyrus x bretschneideri]
5 Hb_002188_030 0.2134521044 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_005466_010 0.2209482377 - - ATPase subunit 6, partial (mitochondrion) [Celastrus scandens]
7 Hb_003494_130 0.2221198618 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
8 Hb_004109_130 0.2256167981 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
9 Hb_000212_370 0.2314805687 - - thioredoxin f-type, putative [Ricinus communis]
10 Hb_080761_010 0.2329289672 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_000574_320 0.2390855862 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
12 Hb_007317_130 0.2401880012 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
13 Hb_007576_150 0.2429704704 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
14 Hb_005332_150 0.2440980748 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
15 Hb_001221_360 0.2466475751 - - late embryogenesis abundant, putative [Ricinus communis]
16 Hb_065525_070 0.2503062045 - - unnamed protein product [Homo sapiens]
17 Hb_000076_050 0.2532088901 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
18 Hb_002030_050 0.2544474523 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
19 Hb_001247_110 0.255733426 - - Polygalacturonase precursor, putative [Ricinus communis]
20 Hb_010565_030 0.2570056022 - - hypothetical protein VITISV_006810 [Vitis vinifera]

Gene co-expression network

sample Hb_000856_320 Hb_000856_320 Hb_141990_020 Hb_141990_020 Hb_000856_320--Hb_141990_020 Hb_000958_100 Hb_000958_100 Hb_000856_320--Hb_000958_100 Hb_017098_060 Hb_017098_060 Hb_000856_320--Hb_017098_060 Hb_002188_030 Hb_002188_030 Hb_000856_320--Hb_002188_030 Hb_005466_010 Hb_005466_010 Hb_000856_320--Hb_005466_010 Hb_003494_130 Hb_003494_130 Hb_000856_320--Hb_003494_130 Hb_141990_020--Hb_005466_010 Hb_117001_010 Hb_117001_010 Hb_141990_020--Hb_117001_010 Hb_010565_030 Hb_010565_030 Hb_141990_020--Hb_010565_030 Hb_001221_360 Hb_001221_360 Hb_141990_020--Hb_001221_360 Hb_003106_250 Hb_003106_250 Hb_141990_020--Hb_003106_250 Hb_021079_020 Hb_021079_020 Hb_000958_100--Hb_021079_020 Hb_007317_130 Hb_007317_130 Hb_000958_100--Hb_007317_130 Hb_015778_060 Hb_015778_060 Hb_000958_100--Hb_015778_060 Hb_000212_370 Hb_000212_370 Hb_000958_100--Hb_000212_370 Hb_004162_190 Hb_004162_190 Hb_000958_100--Hb_004162_190 Hb_002078_270 Hb_002078_270 Hb_000958_100--Hb_002078_270 Hb_000165_100 Hb_000165_100 Hb_017098_060--Hb_000165_100 Hb_029584_160 Hb_029584_160 Hb_017098_060--Hb_029584_160 Hb_026314_030 Hb_026314_030 Hb_017098_060--Hb_026314_030 Hb_005305_010 Hb_005305_010 Hb_017098_060--Hb_005305_010 Hb_004218_300 Hb_004218_300 Hb_017098_060--Hb_004218_300 Hb_000556_070 Hb_000556_070 Hb_002188_030--Hb_000556_070 Hb_000107_090 Hb_000107_090 Hb_002188_030--Hb_000107_090 Hb_000574_320 Hb_000574_320 Hb_002188_030--Hb_000574_320 Hb_140389_010 Hb_140389_010 Hb_002188_030--Hb_140389_010 Hb_020400_020 Hb_020400_020 Hb_002188_030--Hb_020400_020 Hb_005015_020 Hb_005015_020 Hb_002188_030--Hb_005015_020 Hb_005466_010--Hb_117001_010 Hb_003327_020 Hb_003327_020 Hb_005466_010--Hb_003327_020 Hb_000518_040 Hb_000518_040 Hb_005466_010--Hb_000518_040 Hb_062273_010 Hb_062273_010 Hb_005466_010--Hb_062273_010 Hb_002010_110 Hb_002010_110 Hb_003494_130--Hb_002010_110 Hb_003941_030 Hb_003941_030 Hb_003494_130--Hb_003941_030 Hb_003494_130--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_003494_130--Hb_000684_280 Hb_000032_400 Hb_000032_400 Hb_003494_130--Hb_000032_400 Hb_011053_030 Hb_011053_030 Hb_003494_130--Hb_011053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0319864 0.915684 0.447549 0.229989 0.0942819 0.0803335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.115925 0.416726 0.0470353 2.07987

CAGE analysis