Hb_000856_340

Information

Type -
Description -
Location Contig856: 292882-295566
Sequence    

Annotation

kegg
ID rcu:RCOM_1513930
description hypothetical protein
nr
ID XP_012080219.1
description PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K550
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11593 PE=4 SV=1
Gene Ontology
ID GO:0005730
description PREDICTED: uncharacterized protein LOC105640501

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_340 0.0 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
2 Hb_001518_020 0.0899307809 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
3 Hb_000975_290 0.0917944751 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
4 Hb_007152_020 0.0922784533 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
5 Hb_000173_170 0.0954466293 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
6 Hb_000313_380 0.0961113503 - - conserved hypothetical protein [Ricinus communis]
7 Hb_027472_180 0.0980879429 - - hypothetical protein L484_016229 [Morus notabilis]
8 Hb_000056_100 0.0996357539 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
9 Hb_007760_030 0.1001014922 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
10 Hb_031089_010 0.1001178825 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000376_050 0.1003502849 - - polyadenylate-binding protein, putative [Ricinus communis]
12 Hb_001981_090 0.1015055362 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
13 Hb_000417_180 0.1015781322 - - 60S ribosomal protein L11, putative [Ricinus communis]
14 Hb_001366_230 0.103747338 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004108_050 0.103988506 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
16 Hb_026988_020 0.1045169211 - - outward rectifying K+ channel [Hevea brasiliensis]
17 Hb_000809_040 0.1048521985 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
18 Hb_004662_030 0.1049554106 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
19 Hb_000956_010 0.1050338712 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
20 Hb_002357_040 0.1068606333 - - latex-abundant protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000856_340 Hb_000856_340 Hb_001518_020 Hb_001518_020 Hb_000856_340--Hb_001518_020 Hb_000975_290 Hb_000975_290 Hb_000856_340--Hb_000975_290 Hb_007152_020 Hb_007152_020 Hb_000856_340--Hb_007152_020 Hb_000173_170 Hb_000173_170 Hb_000856_340--Hb_000173_170 Hb_000313_380 Hb_000313_380 Hb_000856_340--Hb_000313_380 Hb_027472_180 Hb_027472_180 Hb_000856_340--Hb_027472_180 Hb_000809_040 Hb_000809_040 Hb_001518_020--Hb_000809_040 Hb_000163_290 Hb_000163_290 Hb_001518_020--Hb_000163_290 Hb_000300_620 Hb_000300_620 Hb_001518_020--Hb_000300_620 Hb_031089_010 Hb_031089_010 Hb_001518_020--Hb_031089_010 Hb_009382_020 Hb_009382_020 Hb_001518_020--Hb_009382_020 Hb_002890_280 Hb_002890_280 Hb_000975_290--Hb_002890_280 Hb_133271_020 Hb_133271_020 Hb_000975_290--Hb_133271_020 Hb_158092_070 Hb_158092_070 Hb_000975_290--Hb_158092_070 Hb_001030_120 Hb_001030_120 Hb_000975_290--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_000975_290--Hb_002686_270 Hb_071736_020 Hb_071736_020 Hb_000975_290--Hb_071736_020 Hb_007152_020--Hb_000173_170 Hb_007760_030 Hb_007760_030 Hb_007152_020--Hb_007760_030 Hb_000418_180 Hb_000418_180 Hb_007152_020--Hb_000418_180 Hb_012340_030 Hb_012340_030 Hb_007152_020--Hb_012340_030 Hb_000107_390 Hb_000107_390 Hb_007152_020--Hb_000107_390 Hb_000956_010 Hb_000956_010 Hb_007152_020--Hb_000956_010 Hb_000173_170--Hb_007760_030 Hb_001191_100 Hb_001191_100 Hb_000173_170--Hb_001191_100 Hb_002326_030 Hb_002326_030 Hb_000173_170--Hb_002326_030 Hb_065500_050 Hb_065500_050 Hb_000173_170--Hb_065500_050 Hb_000173_170--Hb_000956_010 Hb_000313_380--Hb_000809_040 Hb_001366_230 Hb_001366_230 Hb_000313_380--Hb_001366_230 Hb_001366_220 Hb_001366_220 Hb_000313_380--Hb_001366_220 Hb_002662_100 Hb_002662_100 Hb_000313_380--Hb_002662_100 Hb_009026_050 Hb_009026_050 Hb_000313_380--Hb_009026_050 Hb_021068_050 Hb_021068_050 Hb_000313_380--Hb_021068_050 Hb_002097_110 Hb_002097_110 Hb_027472_180--Hb_002097_110 Hb_000703_140 Hb_000703_140 Hb_027472_180--Hb_000703_140 Hb_000376_050 Hb_000376_050 Hb_027472_180--Hb_000376_050 Hb_004662_030 Hb_004662_030 Hb_027472_180--Hb_004662_030 Hb_007101_130 Hb_007101_130 Hb_027472_180--Hb_007101_130 Hb_007426_230 Hb_007426_230 Hb_027472_180--Hb_007426_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4511 1.45243 0.808587 1.46788 7.69873 7.78151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.55768 9.83807 9.37663 2.80832 0.493248

CAGE analysis