Hb_000856_380

Information

Type -
Description -
Location Contig856: 335321-339445
Sequence    

Annotation

kegg
ID vvi:100265550
description UBC2; ubiquitin-conjugating enzyme E2 A
nr
ID KEH19791.1
description ubiquitin-conjugating enzyme [Medicago truncatula]
swissprot
ID P35130
description Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1
trembl
ID A0A072TRF9
description Ubiquitin-conjugating enzyme OS=Medicago truncatula GN=MTR_8g468530 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60609: 335485-339383 , PASA_asmbl_60610: 337154-337567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_380 0.0 - - ubiquitin-conjugating enzyme [Medicago truncatula]
2 Hb_002234_100 0.0599820089 - - F-box family protein, putative isoform 1 [Theobroma cacao]
3 Hb_001437_150 0.0775126028 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
4 Hb_180424_010 0.0870672306 - - Charged multivesicular body protein, putative [Ricinus communis]
5 Hb_000868_110 0.0918707912 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
6 Hb_000367_160 0.0943488766 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
7 Hb_010560_020 0.0954981661 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
8 Hb_000667_070 0.0996305951 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
9 Hb_095296_010 0.1003054849 - - PREDICTED: syntaxin-32 [Jatropha curcas]
10 Hb_000342_060 0.1005003604 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform X1 [Nicotiana sylvestris]
11 Hb_005488_140 0.1011537373 - - 30S ribosomal protein S5, putative [Ricinus communis]
12 Hb_004324_300 0.1038387388 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
13 Hb_001245_100 0.1051050699 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
14 Hb_000164_020 0.1060913334 - - actin binding protein, putative [Ricinus communis]
15 Hb_000869_080 0.1069551285 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
16 Hb_164010_040 0.1070768341 - - serine/threonine protein kinase, putative [Ricinus communis]
17 Hb_153553_030 0.108491808 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
18 Hb_004586_140 0.1086000792 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
19 Hb_011519_010 0.1101264563 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
20 Hb_000679_090 0.1108054784 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]

Gene co-expression network

sample Hb_000856_380 Hb_000856_380 Hb_002234_100 Hb_002234_100 Hb_000856_380--Hb_002234_100 Hb_001437_150 Hb_001437_150 Hb_000856_380--Hb_001437_150 Hb_180424_010 Hb_180424_010 Hb_000856_380--Hb_180424_010 Hb_000868_110 Hb_000868_110 Hb_000856_380--Hb_000868_110 Hb_000367_160 Hb_000367_160 Hb_000856_380--Hb_000367_160 Hb_010560_020 Hb_010560_020 Hb_000856_380--Hb_010560_020 Hb_012389_020 Hb_012389_020 Hb_002234_100--Hb_012389_020 Hb_004586_140 Hb_004586_140 Hb_002234_100--Hb_004586_140 Hb_003125_200 Hb_003125_200 Hb_002234_100--Hb_003125_200 Hb_003747_220 Hb_003747_220 Hb_002234_100--Hb_003747_220 Hb_002234_100--Hb_010560_020 Hb_001123_130 Hb_001123_130 Hb_001437_150--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_001437_150--Hb_000527_060 Hb_004162_130 Hb_004162_130 Hb_001437_150--Hb_004162_130 Hb_008566_050 Hb_008566_050 Hb_001437_150--Hb_008566_050 Hb_012286_030 Hb_012286_030 Hb_001437_150--Hb_012286_030 Hb_000000_210 Hb_000000_210 Hb_180424_010--Hb_000000_210 Hb_000853_430 Hb_000853_430 Hb_180424_010--Hb_000853_430 Hb_005488_140 Hb_005488_140 Hb_180424_010--Hb_005488_140 Hb_004410_080 Hb_004410_080 Hb_180424_010--Hb_004410_080 Hb_004678_040 Hb_004678_040 Hb_180424_010--Hb_004678_040 Hb_095296_010 Hb_095296_010 Hb_000868_110--Hb_095296_010 Hb_002073_200 Hb_002073_200 Hb_000868_110--Hb_002073_200 Hb_164010_040 Hb_164010_040 Hb_000868_110--Hb_164010_040 Hb_003001_080 Hb_003001_080 Hb_000868_110--Hb_003001_080 Hb_021576_110 Hb_021576_110 Hb_000868_110--Hb_021576_110 Hb_000869_080 Hb_000869_080 Hb_000868_110--Hb_000869_080 Hb_000367_160--Hb_012286_030 Hb_000155_200 Hb_000155_200 Hb_000367_160--Hb_000155_200 Hb_019280_050 Hb_019280_050 Hb_000367_160--Hb_019280_050 Hb_000367_160--Hb_004410_080 Hb_000193_110 Hb_000193_110 Hb_000367_160--Hb_000193_110 Hb_000336_150 Hb_000336_150 Hb_000367_160--Hb_000336_150 Hb_004453_170 Hb_004453_170 Hb_010560_020--Hb_004453_170 Hb_010560_020--Hb_000367_160 Hb_000915_090 Hb_000915_090 Hb_010560_020--Hb_000915_090 Hb_010560_020--Hb_000155_200 Hb_000462_130 Hb_000462_130 Hb_010560_020--Hb_000462_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.3577 130.074 128.802 77.6771 63.7497 94.3092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.0629 183.496 128.756 43.8571 38.1322

CAGE analysis