Hb_000856_400

Information

Type -
Description -
Location Contig856: 359845-366455
Sequence    

Annotation

kegg
ID rcu:RCOM_1514300
description calmodulin binding protein, putative
nr
ID XP_012080227.1
description PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
swissprot
ID Q8L4D8
description Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
trembl
ID A0A067K555
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11598 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60614: 359736-360022 , PASA_asmbl_60615: 360923-366461 , PASA_asmbl_60616: 365722-365922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_400 0.0 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
2 Hb_000932_050 0.1002707209 - - annexin [Manihot esculenta]
3 Hb_001195_130 0.1403944768 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000853_180 0.1422963171 - - kinesin heavy chain, putative [Ricinus communis]
5 Hb_001450_040 0.1458795029 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
6 Hb_000193_210 0.1458843143 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
7 Hb_001579_300 0.1521987605 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
8 Hb_000086_210 0.1543337096 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_003408_010 0.155123654 - - fructokinase [Manihot esculenta]
10 Hb_000879_170 0.1565883781 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
11 Hb_000820_110 0.1592475901 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
12 Hb_005144_120 0.1601077839 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
13 Hb_000328_010 0.1606132025 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
14 Hb_000388_080 0.1612220695 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
15 Hb_001369_010 0.1638459303 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
16 Hb_001227_070 0.1643770615 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
17 Hb_009222_110 0.1657620882 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
18 Hb_000649_040 0.1659077568 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
19 Hb_143004_020 0.1683025348 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
20 Hb_000300_480 0.1697654237 - - hypothetical protein RCOM_1321910 [Ricinus communis]

Gene co-expression network

sample Hb_000856_400 Hb_000856_400 Hb_000932_050 Hb_000932_050 Hb_000856_400--Hb_000932_050 Hb_001195_130 Hb_001195_130 Hb_000856_400--Hb_001195_130 Hb_000853_180 Hb_000853_180 Hb_000856_400--Hb_000853_180 Hb_001450_040 Hb_001450_040 Hb_000856_400--Hb_001450_040 Hb_000193_210 Hb_000193_210 Hb_000856_400--Hb_000193_210 Hb_001579_300 Hb_001579_300 Hb_000856_400--Hb_001579_300 Hb_000932_050--Hb_001450_040 Hb_003408_010 Hb_003408_010 Hb_000932_050--Hb_003408_010 Hb_000023_110 Hb_000023_110 Hb_000932_050--Hb_000023_110 Hb_010889_010 Hb_010889_010 Hb_000932_050--Hb_010889_010 Hb_064546_010 Hb_064546_010 Hb_000932_050--Hb_064546_010 Hb_001847_050 Hb_001847_050 Hb_001195_130--Hb_001847_050 Hb_001195_130--Hb_001579_300 Hb_006925_050 Hb_006925_050 Hb_001195_130--Hb_006925_050 Hb_004730_020 Hb_004730_020 Hb_001195_130--Hb_004730_020 Hb_009222_110 Hb_009222_110 Hb_001195_130--Hb_009222_110 Hb_000879_170 Hb_000879_170 Hb_000853_180--Hb_000879_170 Hb_015941_010 Hb_015941_010 Hb_000853_180--Hb_015941_010 Hb_005144_120 Hb_005144_120 Hb_000853_180--Hb_005144_120 Hb_000291_290 Hb_000291_290 Hb_000853_180--Hb_000291_290 Hb_017439_010 Hb_017439_010 Hb_000853_180--Hb_017439_010 Hb_000527_080 Hb_000527_080 Hb_001450_040--Hb_000527_080 Hb_001450_040--Hb_003408_010 Hb_031284_030 Hb_031284_030 Hb_001450_040--Hb_031284_030 Hb_001450_040--Hb_000023_110 Hb_012807_150 Hb_012807_150 Hb_001450_040--Hb_012807_150 Hb_000820_110 Hb_000820_110 Hb_000193_210--Hb_000820_110 Hb_000077_100 Hb_000077_100 Hb_000193_210--Hb_000077_100 Hb_003177_040 Hb_003177_040 Hb_000193_210--Hb_003177_040 Hb_001493_060 Hb_001493_060 Hb_000193_210--Hb_001493_060 Hb_000108_180 Hb_000108_180 Hb_000193_210--Hb_000108_180 Hb_003462_040 Hb_003462_040 Hb_000193_210--Hb_003462_040 Hb_001579_300--Hb_004730_020 Hb_000152_440 Hb_000152_440 Hb_001579_300--Hb_000152_440 Hb_005511_130 Hb_005511_130 Hb_001579_300--Hb_005511_130 Hb_000388_080 Hb_000388_080 Hb_001579_300--Hb_000388_080 Hb_001579_300--Hb_006925_050 Hb_001579_300--Hb_000527_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.32344 3.21867 43.6788 73.2879 3.59584 4.93365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.84814 2.03756 5.28513 2.97222 38.6579

CAGE analysis