Hb_000856_420

Information

Type -
Description -
Location Contig856: 381147-389891
Sequence    

Annotation

kegg
ID rcu:RCOM_1514540
description abc transporter, putative (EC:3.6.3.31)
nr
ID AIU41627.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9STT5
description ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7 PE=3 SV=2
trembl
ID A0A097P9Q4
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCA7 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter a family member 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60624: 382829-383803 , PASA_asmbl_60625: 384922-386820 , PASA_asmbl_60626: 386908-389508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_420 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_010812_050 0.0659206738 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Jatropha curcas]
3 Hb_008695_110 0.072499305 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
4 Hb_008059_010 0.0781506817 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
5 Hb_000834_200 0.0824903833 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
6 Hb_022256_060 0.0839790435 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
7 Hb_000343_250 0.0854271332 - - PREDICTED: protein CASC3 [Jatropha curcas]
8 Hb_000200_380 0.0860323062 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
9 Hb_000230_090 0.088544241 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
10 Hb_000914_120 0.0891614263 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
11 Hb_007479_070 0.0908677145 - - peroxisomal membrane protein [Hevea brasiliensis]
12 Hb_000346_060 0.0913810436 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
13 Hb_025557_050 0.09225438 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
14 Hb_000243_210 0.0929588009 - - protein with unknown function [Ricinus communis]
15 Hb_004097_070 0.0935089701 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
16 Hb_002732_040 0.09399041 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
17 Hb_000836_410 0.0942481759 - - sec10, putative [Ricinus communis]
18 Hb_006816_430 0.0948240533 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
19 Hb_000671_070 0.0955635599 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
20 Hb_004236_050 0.0961755636 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]

Gene co-expression network

sample Hb_000856_420 Hb_000856_420 Hb_010812_050 Hb_010812_050 Hb_000856_420--Hb_010812_050 Hb_008695_110 Hb_008695_110 Hb_000856_420--Hb_008695_110 Hb_008059_010 Hb_008059_010 Hb_000856_420--Hb_008059_010 Hb_000834_200 Hb_000834_200 Hb_000856_420--Hb_000834_200 Hb_022256_060 Hb_022256_060 Hb_000856_420--Hb_022256_060 Hb_000343_250 Hb_000343_250 Hb_000856_420--Hb_000343_250 Hb_025557_050 Hb_025557_050 Hb_010812_050--Hb_025557_050 Hb_007479_070 Hb_007479_070 Hb_010812_050--Hb_007479_070 Hb_000849_020 Hb_000849_020 Hb_010812_050--Hb_000849_020 Hb_001789_190 Hb_001789_190 Hb_010812_050--Hb_001789_190 Hb_002027_090 Hb_002027_090 Hb_010812_050--Hb_002027_090 Hb_000084_250 Hb_000084_250 Hb_008695_110--Hb_000084_250 Hb_000914_120 Hb_000914_120 Hb_008695_110--Hb_000914_120 Hb_138596_010 Hb_138596_010 Hb_008695_110--Hb_138596_010 Hb_000230_090 Hb_000230_090 Hb_008695_110--Hb_000230_090 Hb_008695_110--Hb_022256_060 Hb_000574_440 Hb_000574_440 Hb_008695_110--Hb_000574_440 Hb_031284_010 Hb_031284_010 Hb_008059_010--Hb_031284_010 Hb_007765_100 Hb_007765_100 Hb_008059_010--Hb_007765_100 Hb_000115_280 Hb_000115_280 Hb_008059_010--Hb_000115_280 Hb_000457_230 Hb_000457_230 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410 Hb_000205_260 Hb_000205_260 Hb_008059_010--Hb_000205_260 Hb_000174_170 Hb_000174_170 Hb_000834_200--Hb_000174_170 Hb_000906_100 Hb_000906_100 Hb_000834_200--Hb_000906_100 Hb_000834_200--Hb_008059_010 Hb_008221_180 Hb_008221_180 Hb_000834_200--Hb_008221_180 Hb_000679_020 Hb_000679_020 Hb_000834_200--Hb_000679_020 Hb_008887_020 Hb_008887_020 Hb_022256_060--Hb_008887_020 Hb_000679_340 Hb_000679_340 Hb_022256_060--Hb_000679_340 Hb_022256_060--Hb_000230_090 Hb_000160_350 Hb_000160_350 Hb_022256_060--Hb_000160_350 Hb_001821_160 Hb_001821_160 Hb_022256_060--Hb_001821_160 Hb_002732_040 Hb_002732_040 Hb_000343_250--Hb_002732_040 Hb_000462_060 Hb_000462_060 Hb_000343_250--Hb_000462_060 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000346_060 Hb_000346_060 Hb_000343_250--Hb_000346_060 Hb_004963_030 Hb_004963_030 Hb_000343_250--Hb_004963_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.72899 10.543 11.0011 5.13985 11.4802 11.8932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.94225 5.42961 6.52857 4.73096 11.3513

CAGE analysis