Hb_000858_050

Information

Type -
Description -
Location Contig858: 107265-109967
Sequence    

Annotation

kegg
ID rcu:RCOM_0917060
description kinase, putative (EC:2.7.10.2)
nr
ID XP_002530992.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9SCZ4
description Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1
trembl
ID B9SYC3
description Kinase, putative OS=Ricinus communis GN=RCOM_0917060 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase feronia

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60665: 109546-109925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000858_050 0.0 - - kinase, putative [Ricinus communis]
2 Hb_015807_020 0.0747179958 - - gibberellin 20-oxidase, putative [Ricinus communis]
3 Hb_000282_100 0.0815087713 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
4 Hb_000026_060 0.0845620042 - - beta-1,3-glucanase [Manihot esculenta]
5 Hb_004146_030 0.088925611 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_005029_030 0.0957584783 - - PREDICTED: LOW QUALITY PROTEIN: 36.4 kDa proline-rich protein-like [Sesamum indicum]
7 Hb_001289_050 0.0968092976 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
8 Hb_080791_010 0.0968550117 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
9 Hb_001579_050 0.0982580581 - - alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_001001_130 0.100724537 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
11 Hb_168319_040 0.1028902267 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
12 Hb_002041_020 0.1051233553 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
13 Hb_007122_010 0.1078859041 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
14 Hb_000135_080 0.1090643152 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
15 Hb_000270_040 0.1095805566 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000018_130 0.1121723483 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
17 Hb_077151_010 0.1129337077 - - ankyrin repeat protein [Bruguiera gymnorhiza]
18 Hb_009093_020 0.1130529668 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
19 Hb_000841_040 0.116109124 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
20 Hb_005678_030 0.1168864663 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]

Gene co-expression network

sample Hb_000858_050 Hb_000858_050 Hb_015807_020 Hb_015807_020 Hb_000858_050--Hb_015807_020 Hb_000282_100 Hb_000282_100 Hb_000858_050--Hb_000282_100 Hb_000026_060 Hb_000026_060 Hb_000858_050--Hb_000026_060 Hb_004146_030 Hb_004146_030 Hb_000858_050--Hb_004146_030 Hb_005029_030 Hb_005029_030 Hb_000858_050--Hb_005029_030 Hb_001289_050 Hb_001289_050 Hb_000858_050--Hb_001289_050 Hb_001579_050 Hb_001579_050 Hb_015807_020--Hb_001579_050 Hb_015807_020--Hb_001289_050 Hb_004459_050 Hb_004459_050 Hb_015807_020--Hb_004459_050 Hb_077151_010 Hb_077151_010 Hb_015807_020--Hb_077151_010 Hb_015807_020--Hb_000282_100 Hb_000282_100--Hb_001289_050 Hb_009093_020 Hb_009093_020 Hb_000282_100--Hb_009093_020 Hb_000029_390 Hb_000029_390 Hb_000282_100--Hb_000029_390 Hb_000841_040 Hb_000841_040 Hb_000282_100--Hb_000841_040 Hb_004631_020 Hb_004631_020 Hb_000282_100--Hb_004631_020 Hb_001832_180 Hb_001832_180 Hb_000282_100--Hb_001832_180 Hb_080791_010 Hb_080791_010 Hb_000026_060--Hb_080791_010 Hb_000026_060--Hb_004146_030 Hb_003171_040 Hb_003171_040 Hb_000026_060--Hb_003171_040 Hb_015817_010 Hb_015817_010 Hb_000026_060--Hb_015817_010 Hb_007426_070 Hb_007426_070 Hb_000026_060--Hb_007426_070 Hb_004146_030--Hb_007426_070 Hb_000017_210 Hb_000017_210 Hb_004146_030--Hb_000017_210 Hb_000483_440 Hb_000483_440 Hb_004146_030--Hb_000483_440 Hb_004146_030--Hb_001579_050 Hb_005029_030--Hb_015817_010 Hb_000270_040 Hb_000270_040 Hb_005029_030--Hb_000270_040 Hb_005029_030--Hb_080791_010 Hb_000476_030 Hb_000476_030 Hb_005029_030--Hb_000476_030 Hb_000135_080 Hb_000135_080 Hb_005029_030--Hb_000135_080 Hb_004807_040 Hb_004807_040 Hb_001289_050--Hb_004807_040 Hb_001289_050--Hb_009093_020 Hb_001289_050--Hb_000841_040 Hb_011381_120 Hb_011381_120 Hb_001289_050--Hb_011381_120 Hb_001289_050--Hb_001579_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.45304 4.70103 1.39304 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0324742 0.0127771 0 1.23227 23.5053

CAGE analysis