Hb_000859_040

Information

Type -
Description -
Location Contig859: 52211-53523
Sequence    

Annotation

kegg
ID rcu:RCOM_1075040
description Early nodulin 16 precursor, putative
nr
ID XP_002527193.1
description Early nodulin 16 precursor, putative [Ricinus communis]
swissprot
ID Q9SK27
description Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2
trembl
ID B9SMH4
description Early nodulin 16, putative OS=Ricinus communis GN=RCOM_1075040 PE=4 SV=1
Gene Ontology
ID GO:0009055
description blue copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000859_040 0.0 - - Early nodulin 16 precursor, putative [Ricinus communis]
2 Hb_007810_140 0.0211294875 - - Ankyrin repeat-containing protein [Medicago truncatula]
3 Hb_000160_230 0.0275542582 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
4 Hb_001410_090 0.0553579084 - - transferase, putative [Ricinus communis]
5 Hb_001114_300 0.0575730621 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
6 Hb_002615_050 0.0613941248 - - ATP-binding cassette transporter, putative [Ricinus communis]
7 Hb_006196_020 0.0639357672 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
8 Hb_001141_170 0.0682235894 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
9 Hb_011824_010 0.0731687472 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
10 Hb_010712_020 0.0755239213 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
11 Hb_139460_010 0.0805598179 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
12 Hb_012019_030 0.0815734236 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
13 Hb_000488_040 0.0843342648 - - unnamed protein product [Vitis vinifera]
14 Hb_001999_220 0.0855860542 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
15 Hb_000905_140 0.0865469158 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
16 Hb_001114_290 0.0885305988 - - conserved hypothetical protein [Ricinus communis]
17 Hb_039342_030 0.0890635184 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005747_040 0.0897043605 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
19 Hb_106528_010 0.0899681708 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
20 Hb_173102_010 0.09119324 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000859_040 Hb_000859_040 Hb_007810_140 Hb_007810_140 Hb_000859_040--Hb_007810_140 Hb_000160_230 Hb_000160_230 Hb_000859_040--Hb_000160_230 Hb_001410_090 Hb_001410_090 Hb_000859_040--Hb_001410_090 Hb_001114_300 Hb_001114_300 Hb_000859_040--Hb_001114_300 Hb_002615_050 Hb_002615_050 Hb_000859_040--Hb_002615_050 Hb_006196_020 Hb_006196_020 Hb_000859_040--Hb_006196_020 Hb_007810_140--Hb_000160_230 Hb_007810_140--Hb_002615_050 Hb_007810_140--Hb_006196_020 Hb_011824_010 Hb_011824_010 Hb_007810_140--Hb_011824_010 Hb_139460_010 Hb_139460_010 Hb_007810_140--Hb_139460_010 Hb_000160_230--Hb_002615_050 Hb_000160_230--Hb_006196_020 Hb_000160_230--Hb_011824_010 Hb_010712_020 Hb_010712_020 Hb_000160_230--Hb_010712_020 Hb_005747_040 Hb_005747_040 Hb_001410_090--Hb_005747_040 Hb_106528_010 Hb_106528_010 Hb_001410_090--Hb_106528_010 Hb_002551_010 Hb_002551_010 Hb_001410_090--Hb_002551_010 Hb_001114_290 Hb_001114_290 Hb_001410_090--Hb_001114_290 Hb_001410_090--Hb_001114_300 Hb_000905_140 Hb_000905_140 Hb_001114_300--Hb_000905_140 Hb_000329_410 Hb_000329_410 Hb_001114_300--Hb_000329_410 Hb_001141_170 Hb_001141_170 Hb_001114_300--Hb_001141_170 Hb_169426_010 Hb_169426_010 Hb_001114_300--Hb_169426_010 Hb_005780_010 Hb_005780_010 Hb_001114_300--Hb_005780_010 Hb_002615_050--Hb_006196_020 Hb_002615_050--Hb_011824_010 Hb_002615_050--Hb_139460_010 Hb_042664_010 Hb_042664_010 Hb_006196_020--Hb_042664_010 Hb_039342_030 Hb_039342_030 Hb_006196_020--Hb_039342_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.637746 0.0146016 0.0616381 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.18668 0

CAGE analysis