Hb_000859_050

Information

Type -
Description -
Location Contig859: 64422-78861
Sequence    

Annotation

kegg
ID rcu:RCOM_1075030
description Cucumber peeling cupredoxin, putative
nr
ID KDP30272.1
description hypothetical protein JCGZ_17054 [Jatropha curcas]
swissprot
ID P00302
description Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1
trembl
ID A0A067K2E2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17054 PE=4 SV=1
Gene Ontology
ID GO:0009055
description cucumber peeling

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60671: 64413-65318 , PASA_asmbl_60672: 73184-78983
cDNA
(Sanger)
(ID:Location)		 001_F11.ab1: 64413-65313 , 013_P21.ab1: 64413-65313 , 032_H17.ab1: 64415-65313 , 035_D12.ab1: 64413-65313 , 036_J06.ab1: 64413-65313 , 040_B10.ab1: 64413-65313 , 053_N04.ab1: 64413-65313

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000859_050 0.0 - - hypothetical protein JCGZ_17054 [Jatropha curcas]
2 Hb_008103_080 0.1119279803 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
3 Hb_005333_160 0.1242511008 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
4 Hb_001511_170 0.128927114 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
5 Hb_003739_030 0.1290482515 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
6 Hb_000922_140 0.129987905 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
7 Hb_171900_070 0.1336222523 - - -
8 Hb_000086_560 0.1346808119 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
9 Hb_005332_020 0.1385726585 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_001198_150 0.1391133309 - - hypothetical protein POPTR_0003s01280g [Populus trichocarpa]
11 Hb_002304_060 0.1407833094 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
12 Hb_000523_080 0.1413143442 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
13 Hb_000359_120 0.1430465399 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000917_320 0.1435882239 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
15 Hb_001504_040 0.1440299133 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
16 Hb_002374_260 0.1442437119 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
17 Hb_001427_190 0.1454715585 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
18 Hb_007929_080 0.1466245341 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
19 Hb_002092_100 0.1469253886 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
20 Hb_009771_110 0.1471770149 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000859_050 Hb_000859_050 Hb_008103_080 Hb_008103_080 Hb_000859_050--Hb_008103_080 Hb_005333_160 Hb_005333_160 Hb_000859_050--Hb_005333_160 Hb_001511_170 Hb_001511_170 Hb_000859_050--Hb_001511_170 Hb_003739_030 Hb_003739_030 Hb_000859_050--Hb_003739_030 Hb_000922_140 Hb_000922_140 Hb_000859_050--Hb_000922_140 Hb_171900_070 Hb_171900_070 Hb_000859_050--Hb_171900_070 Hb_000917_320 Hb_000917_320 Hb_008103_080--Hb_000917_320 Hb_008103_080--Hb_000922_140 Hb_000963_130 Hb_000963_130 Hb_008103_080--Hb_000963_130 Hb_005332_020 Hb_005332_020 Hb_008103_080--Hb_005332_020 Hb_004079_120 Hb_004079_120 Hb_008103_080--Hb_004079_120 Hb_005333_160--Hb_171900_070 Hb_003943_020 Hb_003943_020 Hb_005333_160--Hb_003943_020 Hb_000086_560 Hb_000086_560 Hb_005333_160--Hb_000086_560 Hb_000359_120 Hb_000359_120 Hb_005333_160--Hb_000359_120 Hb_000523_080 Hb_000523_080 Hb_005333_160--Hb_000523_080 Hb_011689_060 Hb_011689_060 Hb_005333_160--Hb_011689_060 Hb_002918_060 Hb_002918_060 Hb_001511_170--Hb_002918_060 Hb_001511_170--Hb_171900_070 Hb_002422_050 Hb_002422_050 Hb_001511_170--Hb_002422_050 Hb_002631_170 Hb_002631_170 Hb_001511_170--Hb_002631_170 Hb_002093_030 Hb_002093_030 Hb_001511_170--Hb_002093_030 Hb_001828_160 Hb_001828_160 Hb_001511_170--Hb_001828_160 Hb_000261_030 Hb_000261_030 Hb_003739_030--Hb_000261_030 Hb_000010_360 Hb_000010_360 Hb_003739_030--Hb_000010_360 Hb_009771_110 Hb_009771_110 Hb_003739_030--Hb_009771_110 Hb_001452_220 Hb_001452_220 Hb_003739_030--Hb_001452_220 Hb_002784_010 Hb_002784_010 Hb_003739_030--Hb_002784_010 Hb_148909_030 Hb_148909_030 Hb_003739_030--Hb_148909_030 Hb_001953_150 Hb_001953_150 Hb_000922_140--Hb_001953_150 Hb_000922_140--Hb_005332_020 Hb_006658_040 Hb_006658_040 Hb_000922_140--Hb_006658_040 Hb_004429_160 Hb_004429_160 Hb_000922_140--Hb_004429_160 Hb_001427_190 Hb_001427_190 Hb_000922_140--Hb_001427_190 Hb_001307_080 Hb_001307_080 Hb_000922_140--Hb_001307_080 Hb_171900_070--Hb_000359_120 Hb_005289_040 Hb_005289_040 Hb_171900_070--Hb_005289_040 Hb_171900_070--Hb_000086_560 Hb_032202_120 Hb_032202_120 Hb_171900_070--Hb_032202_120 Hb_171900_070--Hb_011689_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
148.761 63.0622 123.014 38.3278 137.012 118.555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4445 32.8227 21.6123 130.114 106.763

CAGE analysis