Hb_000861_020

Information

Type transcription factor
Description TF Family: mTERF
Location Contig861: 3431-7675
Sequence    

Annotation

kegg
ID pop:POPTR_0001s07200g
description POPTRDRAFT_547760; hypothetical protein
nr
ID XP_012068749.1
description PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L028
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24592 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000861_020 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
2 Hb_103118_010 0.0793869223 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
3 Hb_105123_010 0.0809833362 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
4 Hb_000631_080 0.0882740069 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
5 Hb_086639_040 0.0931960517 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
6 Hb_000061_210 0.0942780924 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
7 Hb_002154_100 0.0980432483 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
8 Hb_002811_130 0.1004806246 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
9 Hb_001049_110 0.1006865168 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_155159_030 0.1013785452 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
11 Hb_015941_020 0.1014012592 - - -
12 Hb_022693_060 0.1020353235 - - -
13 Hb_001014_160 0.1026710993 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
14 Hb_082609_010 0.105739681 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
15 Hb_018133_090 0.1086891721 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004994_380 0.10997834 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
17 Hb_001439_060 0.1100240067 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
18 Hb_002685_210 0.1100605328 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
19 Hb_032258_030 0.112483946 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
20 Hb_000289_110 0.1125471201 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_000861_020 Hb_000861_020 Hb_103118_010 Hb_103118_010 Hb_000861_020--Hb_103118_010 Hb_105123_010 Hb_105123_010 Hb_000861_020--Hb_105123_010 Hb_000631_080 Hb_000631_080 Hb_000861_020--Hb_000631_080 Hb_086639_040 Hb_086639_040 Hb_000861_020--Hb_086639_040 Hb_000061_210 Hb_000061_210 Hb_000861_020--Hb_000061_210 Hb_002154_100 Hb_002154_100 Hb_000861_020--Hb_002154_100 Hb_103118_010--Hb_000061_210 Hb_012675_050 Hb_012675_050 Hb_103118_010--Hb_012675_050 Hb_003688_150 Hb_003688_150 Hb_103118_010--Hb_003688_150 Hb_002408_020 Hb_002408_020 Hb_103118_010--Hb_002408_020 Hb_000046_050 Hb_000046_050 Hb_103118_010--Hb_000046_050 Hb_155159_030 Hb_155159_030 Hb_105123_010--Hb_155159_030 Hb_127552_030 Hb_127552_030 Hb_105123_010--Hb_127552_030 Hb_012098_080 Hb_012098_080 Hb_105123_010--Hb_012098_080 Hb_032258_030 Hb_032258_030 Hb_105123_010--Hb_032258_030 Hb_022693_060 Hb_022693_060 Hb_105123_010--Hb_022693_060 Hb_000574_390 Hb_000574_390 Hb_000631_080--Hb_000574_390 Hb_000631_080--Hb_086639_040 Hb_002685_210 Hb_002685_210 Hb_000631_080--Hb_002685_210 Hb_015941_020 Hb_015941_020 Hb_000631_080--Hb_015941_020 Hb_004225_050 Hb_004225_050 Hb_000631_080--Hb_004225_050 Hb_086639_040--Hb_000574_390 Hb_000707_050 Hb_000707_050 Hb_086639_040--Hb_000707_050 Hb_005496_130 Hb_005496_130 Hb_086639_040--Hb_005496_130 Hb_086639_040--Hb_003688_150 Hb_086639_040--Hb_103118_010 Hb_008453_030 Hb_008453_030 Hb_000061_210--Hb_008453_030 Hb_000061_210--Hb_002408_020 Hb_000061_210--Hb_012675_050 Hb_000421_220 Hb_000421_220 Hb_000061_210--Hb_000421_220 Hb_001049_110 Hb_001049_110 Hb_000061_210--Hb_001049_110 Hb_001014_160 Hb_001014_160 Hb_002154_100--Hb_001014_160 Hb_000331_260 Hb_000331_260 Hb_002154_100--Hb_000331_260 Hb_007390_010 Hb_007390_010 Hb_002154_100--Hb_007390_010 Hb_156279_020 Hb_156279_020 Hb_002154_100--Hb_156279_020 Hb_044728_010 Hb_044728_010 Hb_002154_100--Hb_044728_010 Hb_110291_010 Hb_110291_010 Hb_002154_100--Hb_110291_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.828549 0.37024 0.455225 0.527288 0.764746 1.34613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.900243 1.31542 1.0709 0.709363 1.6192

CAGE analysis