Hb_000861_050

Information

Type -
Description -
Location Contig861: 15793-26352
Sequence    

Annotation

kegg
ID vvi:100241331
description transcription elongation factor SPT6
nr
ID XP_011034668.1
description PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
swissprot
ID Q7KZ85
description Transcription elongation factor SPT6 OS=Homo sapiens GN=SUPT6H PE=1 SV=2
trembl
ID F6HQR0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g00610 PE=4 SV=1
Gene Ontology
ID GO:0003676
description transcription elongation factor spt6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60818: 24935-26187
cDNA
(Sanger)
(ID:Location)		 003_C24.ab1: 24935-26187

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000861_050 0.0 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
2 Hb_005410_030 0.1281088857 - - glutaredoxin 2 [Hevea brasiliensis]
3 Hb_000052_010 0.1338060042 - - hypothetical protein M569_08416, partial [Genlisea aurea]
4 Hb_003023_050 0.1374542758 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
5 Hb_004055_060 0.1405217734 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
6 Hb_000714_010 0.1527642447 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
7 Hb_000005_030 0.1584688033 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
8 Hb_000599_050 0.1605179767 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
9 Hb_001143_010 0.1635565002 - - -
10 Hb_028365_010 0.1647841333 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
11 Hb_000580_160 0.1670926072 - - Nitrate transporter 1.5 [Morus notabilis]
12 Hb_003777_230 0.1699041035 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
13 Hb_000526_020 0.1758067418 - - thioredoxin-like family protein [Hevea brasiliensis]
14 Hb_010166_020 0.1776705883 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
15 Hb_002235_220 0.1808444952 - - PREDICTED: pectinesterase 31-like [Jatropha curcas]
16 Hb_002918_300 0.1809081374 - - -
17 Hb_149683_010 0.183200201 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
18 Hb_007741_040 0.1854921672 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
19 Hb_006816_440 0.1870453774 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_150299_030 0.1878447595 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000861_050 Hb_000861_050 Hb_005410_030 Hb_005410_030 Hb_000861_050--Hb_005410_030 Hb_000052_010 Hb_000052_010 Hb_000861_050--Hb_000052_010 Hb_003023_050 Hb_003023_050 Hb_000861_050--Hb_003023_050 Hb_004055_060 Hb_004055_060 Hb_000861_050--Hb_004055_060 Hb_000714_010 Hb_000714_010 Hb_000861_050--Hb_000714_010 Hb_000005_030 Hb_000005_030 Hb_000861_050--Hb_000005_030 Hb_001109_120 Hb_001109_120 Hb_005410_030--Hb_001109_120 Hb_005410_030--Hb_000005_030 Hb_000580_160 Hb_000580_160 Hb_005410_030--Hb_000580_160 Hb_012799_060 Hb_012799_060 Hb_005410_030--Hb_012799_060 Hb_012779_110 Hb_012779_110 Hb_005410_030--Hb_012779_110 Hb_000184_180 Hb_000184_180 Hb_000052_010--Hb_000184_180 Hb_000526_020 Hb_000526_020 Hb_000052_010--Hb_000526_020 Hb_003777_230 Hb_003777_230 Hb_000052_010--Hb_003777_230 Hb_006816_440 Hb_006816_440 Hb_000052_010--Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_000052_010--Hb_149683_010 Hb_000052_010--Hb_004055_060 Hb_003023_050--Hb_004055_060 Hb_001279_250 Hb_001279_250 Hb_003023_050--Hb_001279_250 Hb_003023_050--Hb_000580_160 Hb_003023_050--Hb_000052_010 Hb_003023_050--Hb_012779_110 Hb_028365_010 Hb_028365_010 Hb_003023_050--Hb_028365_010 Hb_004055_060--Hb_001279_250 Hb_004055_060--Hb_000580_160 Hb_010166_020 Hb_010166_020 Hb_004055_060--Hb_010166_020 Hb_002492_020 Hb_002492_020 Hb_004055_060--Hb_002492_020 Hb_003050_070 Hb_003050_070 Hb_000714_010--Hb_003050_070 Hb_000250_010 Hb_000250_010 Hb_000714_010--Hb_000250_010 Hb_003211_050 Hb_003211_050 Hb_000714_010--Hb_003211_050 Hb_000714_010--Hb_010166_020 Hb_000714_010--Hb_003777_230 Hb_000714_010--Hb_149683_010 Hb_000005_030--Hb_000526_020 Hb_000005_030--Hb_006816_440 Hb_003038_180 Hb_003038_180 Hb_000005_030--Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_000005_030--Hb_000062_580 Hb_000005_030--Hb_149683_010 Hb_000005_030--Hb_000184_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.80387 0.165911 0.0620662 0.102755 2.42178 2.23396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3701 13.7022 2.64193 0.111054 0.15086

CAGE analysis