Hb_000861_080

Information

Type -
Description -
Location Contig861: 54610-55878
Sequence    

Annotation

kegg
ID rcu:RCOM_0621510
description protein with unknown function
nr
ID XP_012068739.1
description PREDICTED: protein ELC-like [Jatropha curcas]
swissprot
ID Q9LHG8
description Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1
trembl
ID A0A067L012
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24582 PE=4 SV=1
Gene Ontology
ID GO:0006464
description protein elc-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60821: 54487-56065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000861_080 0.0 - - PREDICTED: protein ELC-like [Jatropha curcas]
2 Hb_001089_050 0.0490578084 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
3 Hb_000803_070 0.051146209 - - PREDICTED: protein TRAUCO [Jatropha curcas]
4 Hb_003398_080 0.0620891195 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
5 Hb_001195_530 0.0642827354 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000866_460 0.0645631744 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
7 Hb_020831_030 0.0658747019 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003866_080 0.0664357204 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
9 Hb_000331_680 0.0675673087 - - Protein bem46, putative [Ricinus communis]
10 Hb_003927_040 0.0679680038 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
11 Hb_000645_170 0.068584512 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003929_280 0.069128554 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
13 Hb_000886_050 0.0697910369 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
14 Hb_005653_090 0.0705621847 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
15 Hb_000087_060 0.0706476021 - - protein transporter, putative [Ricinus communis]
16 Hb_000120_130 0.0708005363 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
17 Hb_000025_730 0.0710306857 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
18 Hb_060094_020 0.0711468427 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
19 Hb_001754_030 0.0720036341 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
20 Hb_001279_120 0.0732622395 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000861_080 Hb_000861_080 Hb_001089_050 Hb_001089_050 Hb_000861_080--Hb_001089_050 Hb_000803_070 Hb_000803_070 Hb_000861_080--Hb_000803_070 Hb_003398_080 Hb_003398_080 Hb_000861_080--Hb_003398_080 Hb_001195_530 Hb_001195_530 Hb_000861_080--Hb_001195_530 Hb_000866_460 Hb_000866_460 Hb_000861_080--Hb_000866_460 Hb_020831_030 Hb_020831_030 Hb_000861_080--Hb_020831_030 Hb_003866_080 Hb_003866_080 Hb_001089_050--Hb_003866_080 Hb_000402_230 Hb_000402_230 Hb_001089_050--Hb_000402_230 Hb_001545_150 Hb_001545_150 Hb_001089_050--Hb_001545_150 Hb_004143_100 Hb_004143_100 Hb_001089_050--Hb_004143_100 Hb_001716_020 Hb_001716_020 Hb_001089_050--Hb_001716_020 Hb_001728_050 Hb_001728_050 Hb_000803_070--Hb_001728_050 Hb_032264_060 Hb_032264_060 Hb_000803_070--Hb_032264_060 Hb_003929_280 Hb_003929_280 Hb_000803_070--Hb_003929_280 Hb_001751_140 Hb_001751_140 Hb_000803_070--Hb_001751_140 Hb_003927_040 Hb_003927_040 Hb_000803_070--Hb_003927_040 Hb_001300_010 Hb_001300_010 Hb_003398_080--Hb_001300_010 Hb_003398_080--Hb_000402_230 Hb_004994_240 Hb_004994_240 Hb_003398_080--Hb_004994_240 Hb_003398_080--Hb_001545_150 Hb_000120_910 Hb_000120_910 Hb_003398_080--Hb_000120_910 Hb_001195_530--Hb_020831_030 Hb_105105_010 Hb_105105_010 Hb_001195_530--Hb_105105_010 Hb_003640_040 Hb_003640_040 Hb_001195_530--Hb_003640_040 Hb_001408_140 Hb_001408_140 Hb_001195_530--Hb_001408_140 Hb_002056_090 Hb_002056_090 Hb_001195_530--Hb_002056_090 Hb_002205_250 Hb_002205_250 Hb_001195_530--Hb_002205_250 Hb_001322_130 Hb_001322_130 Hb_000866_460--Hb_001322_130 Hb_000866_460--Hb_002205_250 Hb_002732_040 Hb_002732_040 Hb_000866_460--Hb_002732_040 Hb_000243_210 Hb_000243_210 Hb_000866_460--Hb_000243_210 Hb_002253_080 Hb_002253_080 Hb_000866_460--Hb_002253_080 Hb_001279_120 Hb_001279_120 Hb_000866_460--Hb_001279_120 Hb_020831_030--Hb_003640_040 Hb_020831_030--Hb_002056_090 Hb_000049_260 Hb_000049_260 Hb_020831_030--Hb_000049_260 Hb_004195_200 Hb_004195_200 Hb_020831_030--Hb_004195_200 Hb_013399_100 Hb_013399_100 Hb_020831_030--Hb_013399_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.7833 59.1812 39.0714 31.3089 32.5522 31.6439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.532 28.1582 30.4688 23.4334 29.4423

CAGE analysis