Hb_000862_030

Information

Type -
Description -
Location Contig862: 29043-37310
Sequence    

Annotation

kegg
ID rcu:RCOM_1684600
description hypothetical protein
nr
ID XP_012086988.1
description PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X1 [Jatropha curcas]
swissprot
ID Q8K358
description Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Mus musculus GN=Pigu PE=2 SV=4
trembl
ID B9RC32
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1684600 PE=4 SV=1
Gene Ontology
ID GO:0016021
description phosphatidylinositol glycan anchor biosynthesis class u isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60841: 32050-37161 , PASA_asmbl_60842: 33359-34473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000862_030 0.0 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X1 [Jatropha curcas]
2 Hb_004127_030 0.0526420274 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
3 Hb_002235_170 0.0729760859 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
4 Hb_001492_020 0.0766472622 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
5 Hb_002213_070 0.0858106622 - - epsilon-adaptin family protein [Populus trichocarpa]
6 Hb_004689_050 0.0879412632 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002675_070 0.0880668917 - - PREDICTED: protein CASC3 [Jatropha curcas]
8 Hb_001946_010 0.0906456677 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_002685_110 0.0911043221 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
10 Hb_001124_160 0.0923342771 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
11 Hb_002667_060 0.0930377637 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
12 Hb_000127_040 0.0932863573 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
13 Hb_027472_150 0.093869083 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
14 Hb_073973_100 0.0943048066 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
15 Hb_168978_030 0.0944426107 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
16 Hb_000260_170 0.0944601717 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
17 Hb_003693_070 0.0946699202 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
18 Hb_003777_310 0.0948685129 - - conserved hypothetical protein [Ricinus communis]
19 Hb_022833_100 0.0951668439 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
20 Hb_010142_030 0.0964930865 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000862_030 Hb_000862_030 Hb_004127_030 Hb_004127_030 Hb_000862_030--Hb_004127_030 Hb_002235_170 Hb_002235_170 Hb_000862_030--Hb_002235_170 Hb_001492_020 Hb_001492_020 Hb_000862_030--Hb_001492_020 Hb_002213_070 Hb_002213_070 Hb_000862_030--Hb_002213_070 Hb_004689_050 Hb_004689_050 Hb_000862_030--Hb_004689_050 Hb_002675_070 Hb_002675_070 Hb_000862_030--Hb_002675_070 Hb_000159_090 Hb_000159_090 Hb_004127_030--Hb_000159_090 Hb_026198_070 Hb_026198_070 Hb_004127_030--Hb_026198_070 Hb_011671_040 Hb_011671_040 Hb_004127_030--Hb_011671_040 Hb_000270_490 Hb_000270_490 Hb_004127_030--Hb_000270_490 Hb_001366_370 Hb_001366_370 Hb_004127_030--Hb_001366_370 Hb_002235_170--Hb_001492_020 Hb_001314_010 Hb_001314_010 Hb_002235_170--Hb_001314_010 Hb_105328_020 Hb_105328_020 Hb_002235_170--Hb_105328_020 Hb_000127_040 Hb_000127_040 Hb_002235_170--Hb_000127_040 Hb_002235_170--Hb_002213_070 Hb_001492_020--Hb_002213_070 Hb_000640_120 Hb_000640_120 Hb_001492_020--Hb_000640_120 Hb_007336_010 Hb_007336_010 Hb_001492_020--Hb_007336_010 Hb_000120_060 Hb_000120_060 Hb_001492_020--Hb_000120_060 Hb_001492_020--Hb_001314_010 Hb_002213_070--Hb_000127_040 Hb_000613_050 Hb_000613_050 Hb_002213_070--Hb_000613_050 Hb_002110_190 Hb_002110_190 Hb_002213_070--Hb_002110_190 Hb_000789_310 Hb_000789_310 Hb_002213_070--Hb_000789_310 Hb_000890_210 Hb_000890_210 Hb_002213_070--Hb_000890_210 Hb_004429_100 Hb_004429_100 Hb_004689_050--Hb_004429_100 Hb_033834_060 Hb_033834_060 Hb_004689_050--Hb_033834_060 Hb_001946_010 Hb_001946_010 Hb_004689_050--Hb_001946_010 Hb_000638_120 Hb_000638_120 Hb_004689_050--Hb_000638_120 Hb_000205_100 Hb_000205_100 Hb_004689_050--Hb_000205_100 Hb_100215_010 Hb_100215_010 Hb_004689_050--Hb_100215_010 Hb_004032_150 Hb_004032_150 Hb_002675_070--Hb_004032_150 Hb_011485_070 Hb_011485_070 Hb_002675_070--Hb_011485_070 Hb_002675_070--Hb_000127_040 Hb_002675_070--Hb_002213_070 Hb_000185_040 Hb_000185_040 Hb_002675_070--Hb_000185_040 Hb_001198_100 Hb_001198_100 Hb_002675_070--Hb_001198_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.26197 5.29582 5.54891 9.28949 6.64039 13.9385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9102 5.57967 8.00689 10.3 6.49789

CAGE analysis