Hb_000862_040

Information

Type -
Description -
Location Contig862: 43200-48739
Sequence    

Annotation

kegg
ID rcu:RCOM_1684390
description ara4-interacting protein, putative
nr
ID XP_002509715.1
description ara4-interacting protein, putative [Ricinus communis]
swissprot
ID F4JPR7
description Plant UBX domain-containing protein 8 OS=Arabidopsis thaliana GN=PUX8 PE=1 SV=1
trembl
ID B9RC31
description Ara4-interacting protein, putative OS=Ricinus communis GN=RCOM_1684390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60844: 45167-48592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000862_040 0.0 - - ara4-interacting protein, putative [Ricinus communis]
2 Hb_000940_200 0.0536061139 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
3 Hb_005542_140 0.0595311473 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
4 Hb_000059_020 0.0691949458 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
5 Hb_001935_140 0.0693800791 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
6 Hb_005568_040 0.069884863 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
7 Hb_002325_040 0.0718812507 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
8 Hb_023226_080 0.0720228604 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
9 Hb_001723_010 0.0720704668 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
10 Hb_008948_140 0.0724989172 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
11 Hb_007426_060 0.0726382618 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
12 Hb_000069_130 0.0728507166 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
13 Hb_000768_180 0.0729828321 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
14 Hb_000402_230 0.0731090102 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
15 Hb_000823_030 0.0738169532 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
16 Hb_004586_290 0.0753977316 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
17 Hb_004143_100 0.0759368082 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001668_010 0.0759872597 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
19 Hb_001377_160 0.0760968011 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
20 Hb_007054_040 0.0763360594 - - PREDICTED: protein RST1 [Jatropha curcas]

Gene co-expression network

sample Hb_000862_040 Hb_000862_040 Hb_000940_200 Hb_000940_200 Hb_000862_040--Hb_000940_200 Hb_005542_140 Hb_005542_140 Hb_000862_040--Hb_005542_140 Hb_000059_020 Hb_000059_020 Hb_000862_040--Hb_000059_020 Hb_001935_140 Hb_001935_140 Hb_000862_040--Hb_001935_140 Hb_005568_040 Hb_005568_040 Hb_000862_040--Hb_005568_040 Hb_002325_040 Hb_002325_040 Hb_000862_040--Hb_002325_040 Hb_000631_120 Hb_000631_120 Hb_000940_200--Hb_000631_120 Hb_001205_200 Hb_001205_200 Hb_000940_200--Hb_001205_200 Hb_000363_120 Hb_000363_120 Hb_000940_200--Hb_000363_120 Hb_000940_200--Hb_000059_020 Hb_003866_080 Hb_003866_080 Hb_000940_200--Hb_003866_080 Hb_023226_080 Hb_023226_080 Hb_005542_140--Hb_023226_080 Hb_159558_010 Hb_159558_010 Hb_005542_140--Hb_159558_010 Hb_007426_060 Hb_007426_060 Hb_005542_140--Hb_007426_060 Hb_005542_140--Hb_005568_040 Hb_001668_010 Hb_001668_010 Hb_005542_140--Hb_001668_010 Hb_000059_020--Hb_005568_040 Hb_000700_060 Hb_000700_060 Hb_000059_020--Hb_000700_060 Hb_000197_030 Hb_000197_030 Hb_000059_020--Hb_000197_030 Hb_000009_330 Hb_000009_330 Hb_000059_020--Hb_000009_330 Hb_000105_040 Hb_000105_040 Hb_001935_140--Hb_000105_040 Hb_001541_250 Hb_001541_250 Hb_001935_140--Hb_001541_250 Hb_007054_040 Hb_007054_040 Hb_001935_140--Hb_007054_040 Hb_003581_170 Hb_003581_170 Hb_001935_140--Hb_003581_170 Hb_001935_140--Hb_005542_140 Hb_000479_240 Hb_000479_240 Hb_005568_040--Hb_000479_240 Hb_004645_070 Hb_004645_070 Hb_005568_040--Hb_004645_070 Hb_000331_580 Hb_000331_580 Hb_005568_040--Hb_000331_580 Hb_000008_240 Hb_000008_240 Hb_005568_040--Hb_000008_240 Hb_003912_070 Hb_003912_070 Hb_005568_040--Hb_003912_070 Hb_004586_290 Hb_004586_290 Hb_005568_040--Hb_004586_290 Hb_002477_250 Hb_002477_250 Hb_002325_040--Hb_002477_250 Hb_001135_120 Hb_001135_120 Hb_002325_040--Hb_001135_120 Hb_005542_050 Hb_005542_050 Hb_002325_040--Hb_005542_050 Hb_140049_040 Hb_140049_040 Hb_002325_040--Hb_140049_040 Hb_184798_080 Hb_184798_080 Hb_002325_040--Hb_184798_080 Hb_001147_110 Hb_001147_110 Hb_002325_040--Hb_001147_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3431 27.1992 13.3972 14.0276 15.1876 14.5899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.37018 9.94574 7.63714 19.6024 10.1098

CAGE analysis