Hb_000865_070

Information

Type -
Description -
Location Contig865: 110782-121968
Sequence    

Annotation

kegg
ID rcu:RCOM_1110800
description hypothetical protein
nr
ID KHN46338.1
description Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
swissprot
ID Q9ZVC9
description Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2
trembl
ID A0A0B2SNE8
description Protein FAR1-RELATED SEQUENCE 3 OS=Glycine soja GN=glysoja_045813 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein far1-related sequence 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60915: 112384-122000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000865_070 0.0 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
2 Hb_003226_280 0.0721604582 - - PREDICTED: peter Pan-like protein [Populus euphratica]
3 Hb_000089_160 0.0813152974 - - 60S ribosomal protein L5B [Hevea brasiliensis]
4 Hb_010560_040 0.0857173869 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
5 Hb_000030_100 0.0862162435 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
6 Hb_000363_200 0.0868940406 - - 40S ribosomal protein S8, putative [Ricinus communis]
7 Hb_002078_460 0.0885338225 - - -
8 Hb_002028_130 0.0892244676 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
9 Hb_003097_210 0.0943971341 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
10 Hb_000608_420 0.0971686139 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
11 Hb_001691_210 0.098393251 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
12 Hb_003086_100 0.0984229103 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
13 Hb_002471_080 0.0986691639 - - oxidoreductase, putative [Ricinus communis]
14 Hb_012265_010 0.0995591766 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
15 Hb_003175_040 0.0997826732 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
16 Hb_130291_010 0.1006872319 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
17 Hb_001881_020 0.1008675458 - - clathrin binding protein, putative [Ricinus communis]
18 Hb_148200_010 0.101956239 - - hypothetical protein 33 [Hevea brasiliensis]
19 Hb_003408_020 0.102721915 - - hypothetical protein RCOM_0453040 [Ricinus communis]
20 Hb_000261_460 0.1029025118 - - 60S ribosomal protein L13aA [Hevea brasiliensis]

Gene co-expression network

sample Hb_000865_070 Hb_000865_070 Hb_003226_280 Hb_003226_280 Hb_000865_070--Hb_003226_280 Hb_000089_160 Hb_000089_160 Hb_000865_070--Hb_000089_160 Hb_010560_040 Hb_010560_040 Hb_000865_070--Hb_010560_040 Hb_000030_100 Hb_000030_100 Hb_000865_070--Hb_000030_100 Hb_000363_200 Hb_000363_200 Hb_000865_070--Hb_000363_200 Hb_002078_460 Hb_002078_460 Hb_000865_070--Hb_002078_460 Hb_000239_010 Hb_000239_010 Hb_003226_280--Hb_000239_010 Hb_003226_280--Hb_000363_200 Hb_148200_010 Hb_148200_010 Hb_003226_280--Hb_148200_010 Hb_003226_280--Hb_000030_100 Hb_003226_280--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_000089_160--Hb_001691_210 Hb_001718_100 Hb_001718_100 Hb_000089_160--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_000089_160--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_000089_160--Hb_001427_120 Hb_000089_160--Hb_000030_100 Hb_003175_040 Hb_003175_040 Hb_000089_160--Hb_003175_040 Hb_000742_110 Hb_000742_110 Hb_010560_040--Hb_000742_110 Hb_003097_210 Hb_003097_210 Hb_010560_040--Hb_003097_210 Hb_155764_010 Hb_155764_010 Hb_010560_040--Hb_155764_010 Hb_048476_050 Hb_048476_050 Hb_010560_040--Hb_048476_050 Hb_001427_230 Hb_001427_230 Hb_010560_040--Hb_001427_230 Hb_008289_060 Hb_008289_060 Hb_000030_100--Hb_008289_060 Hb_011465_040 Hb_011465_040 Hb_000030_100--Hb_011465_040 Hb_002918_200 Hb_002918_200 Hb_000030_100--Hb_002918_200 Hb_001109_020 Hb_001109_020 Hb_000030_100--Hb_001109_020 Hb_000363_200--Hb_003097_210 Hb_001545_060 Hb_001545_060 Hb_000363_200--Hb_001545_060 Hb_000363_200--Hb_002078_460 Hb_116898_010 Hb_116898_010 Hb_000363_200--Hb_116898_010 Hb_001616_060 Hb_001616_060 Hb_002078_460--Hb_001616_060 Hb_002028_130 Hb_002028_130 Hb_002078_460--Hb_002028_130 Hb_001278_050 Hb_001278_050 Hb_002078_460--Hb_001278_050 Hb_007382_150 Hb_007382_150 Hb_002078_460--Hb_007382_150 Hb_000032_220 Hb_000032_220 Hb_002078_460--Hb_000032_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.687497 0.197218 0.124402 0.295161 0.757129 1.01389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02723 1.82995 1.58932 0.95855 0.235002

CAGE analysis