Hb_000865_080

Information

Type -
Description -
Location Contig865: 127667-135960
Sequence    

Annotation

kegg
ID rcu:RCOM_1110810
description arsenite-resistance protein, putative
nr
ID XP_002521645.1
description arsenite-resistance protein, putative [Ricinus communis]
swissprot
ID Q9ZVD0
description Serrate RNA effector molecule OS=Arabidopsis thaliana GN=SE PE=1 SV=2
trembl
ID B9S6M6
description Arsenite-resistance protein, putative OS=Ricinus communis GN=RCOM_1110810 PE=4 SV=1
Gene Ontology
ID GO:0005730
description serrate rna effector molecule

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60917: 127473-131460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000865_080 0.0 - - arsenite-resistance protein, putative [Ricinus communis]
2 Hb_000291_190 0.0558758613 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
3 Hb_000224_060 0.0589510029 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
4 Hb_000363_130 0.0693561071 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
5 Hb_004970_150 0.0710149891 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
6 Hb_023827_040 0.0746047434 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
7 Hb_000025_360 0.0747000025 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
8 Hb_001584_170 0.0770098079 - - neutral/alkaline invertase [Manihot esculenta]
9 Hb_003878_140 0.0784875713 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
10 Hb_001059_100 0.0786193584 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
11 Hb_003935_030 0.0805824457 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
12 Hb_002813_010 0.0839282221 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
13 Hb_004032_180 0.0844037802 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
14 Hb_000421_120 0.0847528682 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
15 Hb_000136_090 0.0875238989 - - programmed cell death protein, putative [Ricinus communis]
16 Hb_004734_060 0.087840439 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
17 Hb_017075_030 0.0883282231 - - helicase, putative [Ricinus communis]
18 Hb_076693_020 0.0888569018 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
19 Hb_030565_090 0.0891693647 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
20 Hb_001157_180 0.0906106475 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000865_080 Hb_000865_080 Hb_000291_190 Hb_000291_190 Hb_000865_080--Hb_000291_190 Hb_000224_060 Hb_000224_060 Hb_000865_080--Hb_000224_060 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_000865_080--Hb_000025_360 Hb_000291_190--Hb_000224_060 Hb_000291_190--Hb_000025_360 Hb_006586_050 Hb_006586_050 Hb_000291_190--Hb_006586_050 Hb_003878_140 Hb_003878_140 Hb_000291_190--Hb_003878_140 Hb_001616_050 Hb_001616_050 Hb_000291_190--Hb_001616_050 Hb_000224_060--Hb_003878_140 Hb_000140_080 Hb_000140_080 Hb_000224_060--Hb_000140_080 Hb_000224_060--Hb_000025_360 Hb_000224_060--Hb_001616_050 Hb_001946_300 Hb_001946_300 Hb_000363_130--Hb_001946_300 Hb_140049_020 Hb_140049_020 Hb_000363_130--Hb_140049_020 Hb_000313_340 Hb_000313_340 Hb_000363_130--Hb_000313_340 Hb_030565_090 Hb_030565_090 Hb_000363_130--Hb_030565_090 Hb_000136_090 Hb_000136_090 Hb_000363_130--Hb_000136_090 Hb_000699_250 Hb_000699_250 Hb_004970_150--Hb_000699_250 Hb_000567_010 Hb_000567_010 Hb_004970_150--Hb_000567_010 Hb_003428_070 Hb_003428_070 Hb_004970_150--Hb_003428_070 Hb_003935_030 Hb_003935_030 Hb_004970_150--Hb_003935_030 Hb_005914_060 Hb_005914_060 Hb_004970_150--Hb_005914_060 Hb_076693_020 Hb_076693_020 Hb_023827_040--Hb_076693_020 Hb_045793_010 Hb_045793_010 Hb_023827_040--Hb_045793_010 Hb_023827_040--Hb_000025_360 Hb_023827_040--Hb_000224_060 Hb_001610_110 Hb_001610_110 Hb_023827_040--Hb_001610_110 Hb_000025_360--Hb_045793_010 Hb_002188_110 Hb_002188_110 Hb_000025_360--Hb_002188_110 Hb_000046_010 Hb_000046_010 Hb_000025_360--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000025_360--Hb_001718_090 Hb_183963_030 Hb_183963_030 Hb_000025_360--Hb_183963_030 Hb_000107_500 Hb_000107_500 Hb_000025_360--Hb_000107_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
96.7712 108.59 29.1453 24.7315 80.4835 114.67
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.2651 44.9462 45.822 50.4473 19.8903

CAGE analysis