Hb_000866_010

Information

Type -
Description -
Location Contig866: 5132-6658
Sequence    

Annotation

kegg
ID rcu:RCOM_1615840
description hypothetical protein
nr
ID XP_002511879.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RDU0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1615840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006817_010 0.0653645003 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
3 Hb_000053_110 0.0660417561 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009421_020 0.0661062389 - - PREDICTED: caltractin-like [Jatropha curcas]
5 Hb_007389_010 0.0676739391 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
6 Hb_000260_100 0.0677362618 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002235_250 0.0687123013 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
8 Hb_000753_240 0.0690644474 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
9 Hb_004970_190 0.0695355331 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_000205_190 0.0703180808 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
11 Hb_001001_080 0.0707648539 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
12 Hb_000866_260 0.0731408367 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
13 Hb_000690_160 0.0738658799 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
14 Hb_000883_020 0.074380677 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
15 Hb_000917_060 0.0747863251 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
16 Hb_029142_060 0.0753764119 - - PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha curcas]
17 Hb_000236_240 0.0770650825 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
18 Hb_017358_030 0.0788128619 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
19 Hb_004093_090 0.0790768074 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
20 Hb_002997_080 0.0801933302 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_010 Hb_000866_010 Hb_006817_010 Hb_006817_010 Hb_000866_010--Hb_006817_010 Hb_000053_110 Hb_000053_110 Hb_000866_010--Hb_000053_110 Hb_009421_020 Hb_009421_020 Hb_000866_010--Hb_009421_020 Hb_007389_010 Hb_007389_010 Hb_000866_010--Hb_007389_010 Hb_000260_100 Hb_000260_100 Hb_000866_010--Hb_000260_100 Hb_002235_250 Hb_002235_250 Hb_000866_010--Hb_002235_250 Hb_012725_070 Hb_012725_070 Hb_006817_010--Hb_012725_070 Hb_000808_050 Hb_000808_050 Hb_006817_010--Hb_000808_050 Hb_000390_170 Hb_000390_170 Hb_006817_010--Hb_000390_170 Hb_000690_160 Hb_000690_160 Hb_006817_010--Hb_000690_160 Hb_006817_010--Hb_000053_110 Hb_004970_190 Hb_004970_190 Hb_000053_110--Hb_004970_190 Hb_012395_230 Hb_012395_230 Hb_000053_110--Hb_012395_230 Hb_005271_220 Hb_005271_220 Hb_000053_110--Hb_005271_220 Hb_000261_020 Hb_000261_020 Hb_000053_110--Hb_000261_020 Hb_010222_020 Hb_010222_020 Hb_000053_110--Hb_010222_020 Hb_000365_120 Hb_000365_120 Hb_009421_020--Hb_000365_120 Hb_007632_030 Hb_007632_030 Hb_009421_020--Hb_007632_030 Hb_001512_060 Hb_001512_060 Hb_009421_020--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_009421_020--Hb_000362_200 Hb_000329_320 Hb_000329_320 Hb_009421_020--Hb_000329_320 Hb_000866_260 Hb_000866_260 Hb_007389_010--Hb_000866_260 Hb_000614_160 Hb_000614_160 Hb_007389_010--Hb_000614_160 Hb_017358_030 Hb_017358_030 Hb_007389_010--Hb_017358_030 Hb_007389_010--Hb_002235_250 Hb_032264_070 Hb_032264_070 Hb_007389_010--Hb_032264_070 Hb_005288_150 Hb_005288_150 Hb_000260_100--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000260_100--Hb_002997_080 Hb_000236_240 Hb_000236_240 Hb_000260_100--Hb_000236_240 Hb_001329_130 Hb_001329_130 Hb_000260_100--Hb_001329_130 Hb_000230_560 Hb_000230_560 Hb_000260_100--Hb_000230_560 Hb_007007_060 Hb_007007_060 Hb_000260_100--Hb_007007_060 Hb_005496_140 Hb_005496_140 Hb_002235_250--Hb_005496_140 Hb_000331_260 Hb_000331_260 Hb_002235_250--Hb_000331_260 Hb_001971_010 Hb_001971_010 Hb_002235_250--Hb_001971_010 Hb_000883_020 Hb_000883_020 Hb_002235_250--Hb_000883_020 Hb_000375_350 Hb_000375_350 Hb_002235_250--Hb_000375_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.98745 4.41324 8.24059 4.85931 7.08619 6.66422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.51534 8.38069 7.31856 3.32367 6.45153

CAGE analysis