Hb_000866_020

Information

Type -
Description -
Location Contig866: 7094-10567
Sequence    

Annotation

kegg
ID tcc:TCM_005310
description hypothetical protein
nr
ID KJB22338.1
description hypothetical protein B456_004G042000 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2P6J2
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G042000 PE=4 SV=1
Gene Ontology
ID GO:0009570
description ribosomal rna small subunit methyltransferase g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60922: 7051-9617 , PASA_asmbl_60923: 9212-10500
cDNA
(Sanger)
(ID:Location)		 036_A24.ab1: 7429-9617

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_020 0.0 - - hypothetical protein B456_004G042000 [Gossypium raimondii]
2 Hb_004096_210 0.0955297964 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
3 Hb_000618_110 0.101088865 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
4 Hb_003177_050 0.1109903937 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Populus euphratica]
5 Hb_000327_260 0.1162306525 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000352_280 0.1210065574 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
7 Hb_074197_030 0.1228019744 - - unnamed protein product [Vitis vinifera]
8 Hb_005348_120 0.1229820414 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
9 Hb_137222_010 0.1232556392 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
10 Hb_172426_060 0.1261709044 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
11 Hb_000816_240 0.127611009 - - PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]
12 Hb_009393_130 0.1303246503 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
13 Hb_000041_250 0.1338550827 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
14 Hb_069696_020 0.1342741458 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
15 Hb_022137_050 0.1384621442 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
16 Hb_000948_120 0.1407926728 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
17 Hb_003416_020 0.1411327194 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
18 Hb_000140_460 0.1422160676 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
19 Hb_007803_040 0.1444191856 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
20 Hb_002811_250 0.1455514839 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000866_020 Hb_000866_020 Hb_004096_210 Hb_004096_210 Hb_000866_020--Hb_004096_210 Hb_000618_110 Hb_000618_110 Hb_000866_020--Hb_000618_110 Hb_003177_050 Hb_003177_050 Hb_000866_020--Hb_003177_050 Hb_000327_260 Hb_000327_260 Hb_000866_020--Hb_000327_260 Hb_000352_280 Hb_000352_280 Hb_000866_020--Hb_000352_280 Hb_074197_030 Hb_074197_030 Hb_000866_020--Hb_074197_030 Hb_004096_210--Hb_000618_110 Hb_009838_070 Hb_009838_070 Hb_004096_210--Hb_009838_070 Hb_009393_130 Hb_009393_130 Hb_004096_210--Hb_009393_130 Hb_004096_210--Hb_000327_260 Hb_000816_240 Hb_000816_240 Hb_004096_210--Hb_000816_240 Hb_000847_030 Hb_000847_030 Hb_000618_110--Hb_000847_030 Hb_000140_460 Hb_000140_460 Hb_000618_110--Hb_000140_460 Hb_006970_030 Hb_006970_030 Hb_000618_110--Hb_006970_030 Hb_000618_110--Hb_009393_130 Hb_142663_020 Hb_142663_020 Hb_003177_050--Hb_142663_020 Hb_003177_050--Hb_000618_110 Hb_003177_050--Hb_009393_130 Hb_003680_060 Hb_003680_060 Hb_003177_050--Hb_003680_060 Hb_000948_120 Hb_000948_120 Hb_003177_050--Hb_000948_120 Hb_000539_040 Hb_000539_040 Hb_000327_260--Hb_000539_040 Hb_000327_260--Hb_009838_070 Hb_000327_260--Hb_009393_130 Hb_000116_220 Hb_000116_220 Hb_000327_260--Hb_000116_220 Hb_000832_270 Hb_000832_270 Hb_000327_260--Hb_000832_270 Hb_172426_060 Hb_172426_060 Hb_000352_280--Hb_172426_060 Hb_000019_080 Hb_000019_080 Hb_000352_280--Hb_000019_080 Hb_000352_280--Hb_074197_030 Hb_000352_280--Hb_009393_130 Hb_015141_010 Hb_015141_010 Hb_000352_280--Hb_015141_010 Hb_010557_010 Hb_010557_010 Hb_000352_280--Hb_010557_010 Hb_000612_090 Hb_000612_090 Hb_074197_030--Hb_000612_090 Hb_074197_030--Hb_015141_010 Hb_002235_110 Hb_002235_110 Hb_074197_030--Hb_002235_110 Hb_074197_030--Hb_172426_060 Hb_008725_090 Hb_008725_090 Hb_074197_030--Hb_008725_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.240946 1.15135 13.95 8.3742 0.142699 1.30634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.38149 0.466788 0.0619064 3.34144 21.3463

CAGE analysis