Hb_000866_030

Information

Type -
Description -
Location Contig866: 12574-15451
Sequence    

Annotation

kegg
ID rcu:RCOM_1615820
description hypothetical protein
nr
ID XP_002511877.1
description hypothetical protein RCOM_1615820 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RDT8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1615820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60924: 12572-15221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_030 0.0 - - hypothetical protein RCOM_1615820 [Ricinus communis]
2 Hb_187739_020 0.0748754212 - - PREDICTED: B2 protein [Jatropha curcas]
3 Hb_006913_040 0.0754551014 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
4 Hb_008714_020 0.0755677815 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
5 Hb_002982_040 0.0792474033 - - mta/sah nucleosidase, putative [Ricinus communis]
6 Hb_027028_020 0.0795807785 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
7 Hb_002942_160 0.0813558043 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
8 Hb_061908_010 0.0845879699 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
9 Hb_000370_030 0.0866141362 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
10 Hb_000316_030 0.0870130405 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000956_030 0.0886714337 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
12 Hb_004450_010 0.0889246689 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
13 Hb_000120_500 0.0901468388 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
14 Hb_003656_140 0.0903478156 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
15 Hb_000184_130 0.0912006025 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
16 Hb_007317_190 0.0919561591 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
17 Hb_002716_140 0.0930518711 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
18 Hb_002044_060 0.0962503998 - - elongation factor ts, putative [Ricinus communis]
19 Hb_001040_160 0.0963636828 - - glutaredoxin, grx, putative [Ricinus communis]
20 Hb_000186_280 0.0972159918 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_030 Hb_000866_030 Hb_187739_020 Hb_187739_020 Hb_000866_030--Hb_187739_020 Hb_006913_040 Hb_006913_040 Hb_000866_030--Hb_006913_040 Hb_008714_020 Hb_008714_020 Hb_000866_030--Hb_008714_020 Hb_002982_040 Hb_002982_040 Hb_000866_030--Hb_002982_040 Hb_027028_020 Hb_027028_020 Hb_000866_030--Hb_027028_020 Hb_002942_160 Hb_002942_160 Hb_000866_030--Hb_002942_160 Hb_187739_020--Hb_002982_040 Hb_003656_140 Hb_003656_140 Hb_187739_020--Hb_003656_140 Hb_000160_220 Hb_000160_220 Hb_187739_020--Hb_000160_220 Hb_031862_180 Hb_031862_180 Hb_187739_020--Hb_031862_180 Hb_187739_020--Hb_008714_020 Hb_000645_150 Hb_000645_150 Hb_006913_040--Hb_000645_150 Hb_001829_010 Hb_001829_010 Hb_006913_040--Hb_001829_010 Hb_001019_170 Hb_001019_170 Hb_006913_040--Hb_001019_170 Hb_002820_040 Hb_002820_040 Hb_006913_040--Hb_002820_040 Hb_002097_090 Hb_002097_090 Hb_006913_040--Hb_002097_090 Hb_000333_100 Hb_000333_100 Hb_006913_040--Hb_000333_100 Hb_008714_020--Hb_001019_170 Hb_010180_040 Hb_010180_040 Hb_008714_020--Hb_010180_040 Hb_001040_160 Hb_001040_160 Hb_008714_020--Hb_001040_160 Hb_008714_020--Hb_027028_020 Hb_000699_250 Hb_000699_250 Hb_008714_020--Hb_000699_250 Hb_000046_450 Hb_000046_450 Hb_008714_020--Hb_000046_450 Hb_000031_220 Hb_000031_220 Hb_002982_040--Hb_000031_220 Hb_050455_010 Hb_050455_010 Hb_002982_040--Hb_050455_010 Hb_185830_020 Hb_185830_020 Hb_002982_040--Hb_185830_020 Hb_000069_160 Hb_000069_160 Hb_002982_040--Hb_000069_160 Hb_000915_050 Hb_000915_050 Hb_027028_020--Hb_000915_050 Hb_003362_040 Hb_003362_040 Hb_027028_020--Hb_003362_040 Hb_027028_020--Hb_001019_170 Hb_027028_020--Hb_001040_160 Hb_010931_080 Hb_010931_080 Hb_002942_160--Hb_010931_080 Hb_002044_060 Hb_002044_060 Hb_002942_160--Hb_002044_060 Hb_004370_030 Hb_004370_030 Hb_002942_160--Hb_004370_030 Hb_000789_080 Hb_000789_080 Hb_002942_160--Hb_000789_080 Hb_000364_080 Hb_000364_080 Hb_002942_160--Hb_000364_080 Hb_008695_120 Hb_008695_120 Hb_002942_160--Hb_008695_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.63 50.8948 15.0856 44.2743 71.2767 144.102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.9631 47.6397 35.786 44.9692 18.1175

CAGE analysis