Hb_000866_060

Information

Type -
Description -
Location Contig866: 36143-39125
Sequence    

Annotation

kegg
ID rcu:RCOM_1615780
description ER glycerol-phosphate acyltransferase (EC:2.3.1.15)
nr
ID ACT32032.1
description putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
swissprot
ID Q5XF03
description Probable glycerol-3-phosphate acyltransferase 8 OS=Arabidopsis thaliana GN=GPAT8 PE=2 SV=1
trembl
ID C9WGL2
description Glycerol-3-phosphate acyltransferase 8 OS=Vernicia fordii GN=GPAT8 PE=2 SV=1
Gene Ontology
ID GO:0004366
description probable glycerol-3-phosphate acyltransferase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60927: 36081-39140
cDNA
(Sanger)
(ID:Location)		 005_P23.ab1: 37003-39140 , 020_D17.ab1: 36994-39140 , 023_G11.ab1: 38317-39138 , 026_N14.ab1: 38212-39081 , 034_I23.ab1: 36992-39140 , 038_G06.ab1: 36966-39140 , 045_G19.ab1: 36948-39081

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_060 0.0 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
2 Hb_006267_040 0.0617079022 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
3 Hb_127263_010 0.0625318353 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
4 Hb_000239_050 0.0664813716 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
5 Hb_015044_010 0.0744281006 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
6 Hb_001409_080 0.0762628867 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Populus euphratica]
7 Hb_000300_110 0.0781143995 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
8 Hb_000128_040 0.0865731812 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
9 Hb_124677_010 0.0869033137 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012807_030 0.0881580809 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
11 Hb_003043_130 0.088244129 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
12 Hb_001014_240 0.0958537208 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
13 Hb_000947_010 0.1016542467 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
14 Hb_006938_060 0.1044649787 - - nutrient reservoir, putative [Ricinus communis]
15 Hb_007545_070 0.1050410021 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
16 Hb_004920_020 0.1069083277 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
17 Hb_002243_020 0.1101043139 - - PREDICTED: uncharacterized protein LOC105642097 isoform X1 [Jatropha curcas]
18 Hb_003937_010 0.1108476416 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
19 Hb_174899_010 0.1133426875 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
20 Hb_000041_210 0.1166334859 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_060 Hb_000866_060 Hb_006267_040 Hb_006267_040 Hb_000866_060--Hb_006267_040 Hb_127263_010 Hb_127263_010 Hb_000866_060--Hb_127263_010 Hb_000239_050 Hb_000239_050 Hb_000866_060--Hb_000239_050 Hb_015044_010 Hb_015044_010 Hb_000866_060--Hb_015044_010 Hb_001409_080 Hb_001409_080 Hb_000866_060--Hb_001409_080 Hb_000300_110 Hb_000300_110 Hb_000866_060--Hb_000300_110 Hb_006267_040--Hb_015044_010 Hb_001014_240 Hb_001014_240 Hb_006267_040--Hb_001014_240 Hb_006267_040--Hb_000300_110 Hb_000128_040 Hb_000128_040 Hb_006267_040--Hb_000128_040 Hb_174899_010 Hb_174899_010 Hb_006267_040--Hb_174899_010 Hb_127263_010--Hb_000239_050 Hb_127263_010--Hb_001409_080 Hb_127263_010--Hb_000300_110 Hb_000424_130 Hb_000424_130 Hb_127263_010--Hb_000424_130 Hb_029920_010 Hb_029920_010 Hb_127263_010--Hb_029920_010 Hb_000239_050--Hb_000300_110 Hb_000041_210 Hb_000041_210 Hb_000239_050--Hb_000041_210 Hb_007545_070 Hb_007545_070 Hb_000239_050--Hb_007545_070 Hb_000239_050--Hb_000424_130 Hb_015044_010--Hb_001014_240 Hb_015044_010--Hb_000128_040 Hb_101133_030 Hb_101133_030 Hb_015044_010--Hb_101133_030 Hb_003937_010 Hb_003937_010 Hb_015044_010--Hb_003937_010 Hb_176680_010 Hb_176680_010 Hb_001409_080--Hb_176680_010 Hb_001409_080--Hb_000239_050 Hb_006938_060 Hb_006938_060 Hb_001409_080--Hb_006938_060 Hb_002762_050 Hb_002762_050 Hb_001409_080--Hb_002762_050 Hb_000300_110--Hb_029920_010 Hb_000300_110--Hb_007545_070 Hb_000152_350 Hb_000152_350 Hb_000300_110--Hb_000152_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.54269 96.8683 30.1751 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 12.2473 90.5603

CAGE analysis