Hb_000866_080

Information

Type -
Description -
Location Contig866: 56674-65800
Sequence    

Annotation

kegg
ID rcu:RCOM_1615650
description Minor histocompatibility antigen H13, putative
nr
ID XP_012083376.1
description PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
swissprot
ID Q0WMJ8
description Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1
trembl
ID A0A067K9X9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14390 PE=4 SV=1
Gene Ontology
ID GO:0016021
description signal peptide peptidase-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60931: 56564-65629
cDNA
(Sanger)
(ID:Location)		 046_G03.ab1: 61696-65629

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_080 0.0 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
2 Hb_003895_020 0.0736480515 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
3 Hb_011249_060 0.0736868141 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
4 Hb_015183_100 0.0785017261 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
5 Hb_000300_250 0.0795754858 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
6 Hb_000917_100 0.0839457946 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
7 Hb_004310_040 0.0849502078 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010775_010 0.0851201496 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
9 Hb_001221_090 0.0873746184 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
10 Hb_004195_120 0.088729272 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
11 Hb_005539_040 0.0909007598 - - PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
12 Hb_005765_040 0.0909560718 - - transcription elongation factor s-II, putative [Ricinus communis]
13 Hb_002600_080 0.0910223095 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_004324_060 0.0920913988 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
15 Hb_159295_010 0.0947514226 - - hypothetical protein RCOM_1520720 [Ricinus communis]
16 Hb_006615_030 0.0962914664 - - prolyl oligopeptidase family protein [Populus trichocarpa]
17 Hb_003992_180 0.0979081539 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
18 Hb_001911_010 0.0983936433 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
19 Hb_014720_020 0.0999989413 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
20 Hb_004319_050 0.1000942568 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]

Gene co-expression network

sample Hb_000866_080 Hb_000866_080 Hb_003895_020 Hb_003895_020 Hb_000866_080--Hb_003895_020 Hb_011249_060 Hb_011249_060 Hb_000866_080--Hb_011249_060 Hb_015183_100 Hb_015183_100 Hb_000866_080--Hb_015183_100 Hb_000300_250 Hb_000300_250 Hb_000866_080--Hb_000300_250 Hb_000917_100 Hb_000917_100 Hb_000866_080--Hb_000917_100 Hb_004310_040 Hb_004310_040 Hb_000866_080--Hb_004310_040 Hb_004324_060 Hb_004324_060 Hb_003895_020--Hb_004324_060 Hb_001221_090 Hb_001221_090 Hb_003895_020--Hb_001221_090 Hb_030545_030 Hb_030545_030 Hb_003895_020--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_003895_020--Hb_002903_140 Hb_155159_010 Hb_155159_010 Hb_003895_020--Hb_155159_010 Hb_001427_150 Hb_001427_150 Hb_011249_060--Hb_001427_150 Hb_009302_030 Hb_009302_030 Hb_011249_060--Hb_009302_030 Hb_004899_040 Hb_004899_040 Hb_011249_060--Hb_004899_040 Hb_009486_160 Hb_009486_160 Hb_011249_060--Hb_009486_160 Hb_011249_060--Hb_002903_140 Hb_011249_060--Hb_015183_100 Hb_003142_040 Hb_003142_040 Hb_015183_100--Hb_003142_040 Hb_001171_030 Hb_001171_030 Hb_015183_100--Hb_001171_030 Hb_002968_070 Hb_002968_070 Hb_015183_100--Hb_002968_070 Hb_012940_040 Hb_012940_040 Hb_015183_100--Hb_012940_040 Hb_001341_160 Hb_001341_160 Hb_015183_100--Hb_001341_160 Hb_005539_040 Hb_005539_040 Hb_000300_250--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_000300_250--Hb_000086_050 Hb_007576_230 Hb_007576_230 Hb_000300_250--Hb_007576_230 Hb_000300_250--Hb_001221_090 Hb_009449_090 Hb_009449_090 Hb_000300_250--Hb_009449_090 Hb_002005_120 Hb_002005_120 Hb_000917_100--Hb_002005_120 Hb_002016_060 Hb_002016_060 Hb_000917_100--Hb_002016_060 Hb_000917_100--Hb_015183_100 Hb_002092_070 Hb_002092_070 Hb_000917_100--Hb_002092_070 Hb_000917_100--Hb_001221_090 Hb_004310_040--Hb_002016_060 Hb_004195_120 Hb_004195_120 Hb_004310_040--Hb_004195_120 Hb_010661_020 Hb_010661_020 Hb_004310_040--Hb_010661_020 Hb_004310_040--Hb_011249_060 Hb_004310_040--Hb_015183_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1024 71.4207 37.3021 26.2793 21.6769 18.9853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.479 7.66353 6.0304 28.3834 30.0536

CAGE analysis