Hb_000866_090

Information

Type -
Description -
Location Contig866: 66991-81240
Sequence    

Annotation

kegg
ID cic:CICLE_v10018795mg
description hypothetical protein
nr
ID XP_012083382.1
description PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
swissprot
ID Q8GUH1
description U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2
trembl
ID A0A067JXC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14392 PE=3 SV=1
Gene Ontology
ID GO:0004674
description u-box domain-containing protein 33-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60933: 67438-73050 , PASA_asmbl_60934: 67322-73055 , PASA_asmbl_60935: 75352-81240 , PASA_asmbl_60936: 75394-80829
cDNA
(Sanger)
(ID:Location)		 014_B02.ab1: 70958-73039 , 015_G06.ab1: 70836-73050

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_090 0.0 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
2 Hb_000645_240 0.0844697542 - - AMP dependent ligase, putative [Ricinus communis]
3 Hb_001080_140 0.1001714007 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
4 Hb_002471_140 0.1079325467 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
5 Hb_008667_060 0.1099136578 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
6 Hb_000802_190 0.1100570177 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
7 Hb_001699_150 0.1112943118 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
8 Hb_002631_040 0.1128704182 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
9 Hb_001195_020 0.1152401391 - - PREDICTED: ornithine carbamoyltransferase, chloroplastic [Jatropha curcas]
10 Hb_007765_030 0.1170410388 - - PREDICTED: neutral ceramidase [Jatropha curcas]
11 Hb_000345_340 0.1194749136 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
12 Hb_002524_020 0.1289990089 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
13 Hb_001414_040 0.1290507314 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
14 Hb_001251_060 0.1296253558 - - aldo/keto reductase AKR [Manihot esculenta]
15 Hb_001799_190 0.1298796618 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
16 Hb_148682_010 0.1307681766 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
17 Hb_004126_080 0.1310884947 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
18 Hb_001288_070 0.1324684852 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
19 Hb_000059_130 0.1332206119 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
20 Hb_000622_280 0.1336998129 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_090 Hb_000866_090 Hb_000645_240 Hb_000645_240 Hb_000866_090--Hb_000645_240 Hb_001080_140 Hb_001080_140 Hb_000866_090--Hb_001080_140 Hb_002471_140 Hb_002471_140 Hb_000866_090--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000866_090--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_000866_090--Hb_000802_190 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_000022_180 Hb_000022_180 Hb_000645_240--Hb_000022_180 Hb_004976_040 Hb_004976_040 Hb_000645_240--Hb_004976_040 Hb_000866_370 Hb_000866_370 Hb_000645_240--Hb_000866_370 Hb_000081_120 Hb_000081_120 Hb_000645_240--Hb_000081_120 Hb_000345_340 Hb_000345_340 Hb_000645_240--Hb_000345_340 Hb_002631_040 Hb_002631_040 Hb_001080_140--Hb_002631_040 Hb_001396_010 Hb_001396_010 Hb_001080_140--Hb_001396_010 Hb_000622_280 Hb_000622_280 Hb_001080_140--Hb_000622_280 Hb_007765_030 Hb_007765_030 Hb_001080_140--Hb_007765_030 Hb_002524_020 Hb_002524_020 Hb_001080_140--Hb_002524_020 Hb_002471_140--Hb_000345_340 Hb_002471_140--Hb_008667_060 Hb_000059_130 Hb_000059_130 Hb_002471_140--Hb_000059_130 Hb_001251_060 Hb_001251_060 Hb_002471_140--Hb_001251_060 Hb_002477_120 Hb_002477_120 Hb_002471_140--Hb_002477_120 Hb_008667_060--Hb_000059_130 Hb_008667_060--Hb_002477_120 Hb_000676_040 Hb_000676_040 Hb_008667_060--Hb_000676_040 Hb_008667_060--Hb_002524_020 Hb_008667_060--Hb_000345_340 Hb_000062_080 Hb_000062_080 Hb_000802_190--Hb_000062_080 Hb_000802_190--Hb_002477_120 Hb_127599_010 Hb_127599_010 Hb_000802_190--Hb_127599_010 Hb_004195_120 Hb_004195_120 Hb_000802_190--Hb_004195_120 Hb_003125_020 Hb_003125_020 Hb_000802_190--Hb_003125_020 Hb_001799_190 Hb_001799_190 Hb_001699_150--Hb_001799_190 Hb_004126_080 Hb_004126_080 Hb_001699_150--Hb_004126_080 Hb_148682_010 Hb_148682_010 Hb_001699_150--Hb_148682_010 Hb_001675_010 Hb_001675_010 Hb_001699_150--Hb_001675_010 Hb_002016_060 Hb_002016_060 Hb_001699_150--Hb_002016_060 Hb_003544_070 Hb_003544_070 Hb_001699_150--Hb_003544_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39673 31.5166 9.87117 7.54521 5.71637 4.55142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.45019 4.19042 3.74112 23.6677 6.84642

CAGE analysis