Hb_000866_110

Information

Type -
Description -
Location Contig866: 102237-108648
Sequence    

Annotation

kegg
ID pop:POPTR_0014s08030g
description POPTRDRAFT_572258; hypothetical protein
nr
ID XP_012083387.1
description PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
swissprot
ID F4HSD5
description Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=2 SV=1
trembl
ID A0A067K0N3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14394 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60938: 102510-108611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_110 0.0 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
2 Hb_002235_310 0.05294252 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
3 Hb_000205_250 0.0743171539 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
4 Hb_000125_180 0.0866862607 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
5 Hb_001006_010 0.0882424942 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
6 Hb_011925_020 0.0941365471 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_000271_120 0.1012705971 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
8 Hb_000649_120 0.1012783008 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_005181_050 0.1074638235 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
10 Hb_053575_020 0.1075705858 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
11 Hb_001366_270 0.1079428693 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
12 Hb_000227_330 0.1094715724 - - Acyl-CoA synthetase [Ricinus communis]
13 Hb_001235_130 0.1166567896 - - -
14 Hb_007472_080 0.1172241941 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
15 Hb_000080_110 0.117484168 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
16 Hb_000321_090 0.1180617774 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
17 Hb_000007_410 0.1192537148 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
18 Hb_000072_020 0.119861039 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
19 Hb_004884_090 0.1232697318 - - importin beta-1, putative [Ricinus communis]
20 Hb_004586_090 0.1243058841 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_110 Hb_000866_110 Hb_002235_310 Hb_002235_310 Hb_000866_110--Hb_002235_310 Hb_000205_250 Hb_000205_250 Hb_000866_110--Hb_000205_250 Hb_000125_180 Hb_000125_180 Hb_000866_110--Hb_000125_180 Hb_001006_010 Hb_001006_010 Hb_000866_110--Hb_001006_010 Hb_011925_020 Hb_011925_020 Hb_000866_110--Hb_011925_020 Hb_000271_120 Hb_000271_120 Hb_000866_110--Hb_000271_120 Hb_002235_310--Hb_000205_250 Hb_002235_310--Hb_000125_180 Hb_000649_120 Hb_000649_120 Hb_002235_310--Hb_000649_120 Hb_002235_310--Hb_011925_020 Hb_000072_020 Hb_000072_020 Hb_002235_310--Hb_000072_020 Hb_000205_250--Hb_000271_120 Hb_000205_250--Hb_011925_020 Hb_000205_250--Hb_000125_180 Hb_001956_060 Hb_001956_060 Hb_000205_250--Hb_001956_060 Hb_005181_050 Hb_005181_050 Hb_000125_180--Hb_005181_050 Hb_000125_180--Hb_011925_020 Hb_001691_200 Hb_001691_200 Hb_000125_180--Hb_001691_200 Hb_000080_110 Hb_000080_110 Hb_000125_180--Hb_000080_110 Hb_007472_080 Hb_007472_080 Hb_001006_010--Hb_007472_080 Hb_001006_010--Hb_005181_050 Hb_001006_010--Hb_000271_120 Hb_001006_010--Hb_011925_020 Hb_000049_250 Hb_000049_250 Hb_001006_010--Hb_000049_250 Hb_011925_020--Hb_000049_250 Hb_005074_020 Hb_005074_020 Hb_011925_020--Hb_005074_020 Hb_011925_020--Hb_000271_120 Hb_011925_020--Hb_000080_110 Hb_000321_090 Hb_000321_090 Hb_011925_020--Hb_000321_090 Hb_011925_020--Hb_005181_050 Hb_000007_410 Hb_000007_410 Hb_000271_120--Hb_000007_410 Hb_000271_120--Hb_000049_250 Hb_000220_120 Hb_000220_120 Hb_000271_120--Hb_000220_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.27622 19.8264 8.80294 15.4067 1.89845 4.74523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45753 2.79264 6.87556 23.4338 17.7139

CAGE analysis