Hb_000866_140

Information

Type -
Description -
Location Contig866: 128862-131729
Sequence    

Annotation

kegg
ID rcu:RCOM_1615270
description Rop guanine nucleotide exchange factor, putative
nr
ID XP_002511862.1
description Rop guanine nucleotide exchange factor, putative [Ricinus communis]
swissprot
ID A4IJ27
description Rop guanine nucleotide exchange factor 3 OS=Arabidopsis thaliana GN=ROPGEF3 PE=2 SV=1
trembl
ID B9RDS3
description Rop guanine nucleotide exchange factor, putative OS=Ricinus communis GN=RCOM_1615270 PE=4 SV=1
Gene Ontology
ID GO:0005089
description rop guanine nucleotide exchange factor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60946: 129992-130634 , PASA_asmbl_60947: 131811-132084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_140 0.0 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
2 Hb_003428_090 0.0732100303 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
3 Hb_003018_030 0.0808764816 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
4 Hb_000890_160 0.081883875 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
5 Hb_000156_090 0.085641748 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
6 Hb_008725_050 0.0882753186 - - syntaxin, putative [Ricinus communis]
7 Hb_002107_100 0.0937458602 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
8 Hb_001396_010 0.0975119678 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
9 Hb_010068_070 0.0982145403 - - calcium-dependent protein kinase, putative [Ricinus communis]
10 Hb_006452_180 0.1023622273 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
11 Hb_003687_120 0.1031643347 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
12 Hb_000034_110 0.1034810356 - - sentrin/sumo-specific protease, putative [Ricinus communis]
13 Hb_004526_010 0.1041614884 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
14 Hb_001329_200 0.1069051367 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
15 Hb_009372_020 0.1077157263 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
16 Hb_002812_010 0.1079283719 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
17 Hb_000796_120 0.1104983353 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
18 Hb_000270_700 0.1108341916 - - PREDICTED: protease Do-like 9 [Populus euphratica]
19 Hb_003711_010 0.1108587174 - - isopropylmalate synthase, putative [Ricinus communis]
20 Hb_004319_050 0.1113062544 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]

Gene co-expression network

sample Hb_000866_140 Hb_000866_140 Hb_003428_090 Hb_003428_090 Hb_000866_140--Hb_003428_090 Hb_003018_030 Hb_003018_030 Hb_000866_140--Hb_003018_030 Hb_000890_160 Hb_000890_160 Hb_000866_140--Hb_000890_160 Hb_000156_090 Hb_000156_090 Hb_000866_140--Hb_000156_090 Hb_008725_050 Hb_008725_050 Hb_000866_140--Hb_008725_050 Hb_002107_100 Hb_002107_100 Hb_000866_140--Hb_002107_100 Hb_003687_120 Hb_003687_120 Hb_003428_090--Hb_003687_120 Hb_060094_010 Hb_060094_010 Hb_003428_090--Hb_060094_010 Hb_003428_090--Hb_000156_090 Hb_002686_150 Hb_002686_150 Hb_003428_090--Hb_002686_150 Hb_003428_090--Hb_000890_160 Hb_003018_030--Hb_000156_090 Hb_002965_050 Hb_002965_050 Hb_003018_030--Hb_002965_050 Hb_004319_050 Hb_004319_050 Hb_003018_030--Hb_004319_050 Hb_000034_110 Hb_000034_110 Hb_003018_030--Hb_000034_110 Hb_003018_030--Hb_003428_090 Hb_006468_010 Hb_006468_010 Hb_000890_160--Hb_006468_010 Hb_000890_160--Hb_008725_050 Hb_000890_160--Hb_003687_120 Hb_010068_070 Hb_010068_070 Hb_000890_160--Hb_010068_070 Hb_000156_090--Hb_002965_050 Hb_002900_120 Hb_002900_120 Hb_000156_090--Hb_002900_120 Hb_000156_090--Hb_008725_050 Hb_000638_280 Hb_000638_280 Hb_000156_090--Hb_000638_280 Hb_008725_050--Hb_003687_120 Hb_006452_180 Hb_006452_180 Hb_008725_050--Hb_006452_180 Hb_000956_040 Hb_000956_040 Hb_008725_050--Hb_000956_040 Hb_008725_050--Hb_003428_090 Hb_000796_120 Hb_000796_120 Hb_002107_100--Hb_000796_120 Hb_000270_700 Hb_000270_700 Hb_002107_100--Hb_000270_700 Hb_000418_050 Hb_000418_050 Hb_002107_100--Hb_000418_050 Hb_104920_010 Hb_104920_010 Hb_002107_100--Hb_104920_010 Hb_002107_100--Hb_000034_110 Hb_002107_100--Hb_003428_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60997 9.93502 8.8486 6.37822 3.04004 2.32131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.6407 2.92772 2.64648 6.51129 3.02867

CAGE analysis