Hb_000866_170

Information

Type -
Description -
Location Contig866: 139405-141324
Sequence    

Annotation

kegg
ID rcu:RCOM_1615260
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002511861.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O49619
description Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3 SV=1
trembl
ID B9RDS2
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1615260 PE=4 SV=1
Gene Ontology
ID GO:0005488
description pentatricopeptide repeat-containing protein at1g11290-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60948: 139358-141488
cDNA
(Sanger)
(ID:Location)		 008_F12.ab1: 140865-141488

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_170 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000245_040 0.0569570397 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
3 Hb_000297_010 0.0695572098 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
4 Hb_000395_190 0.0709492273 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
5 Hb_000890_210 0.0712946596 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
6 Hb_004724_150 0.0745679459 - - expressed protein, putative [Ricinus communis]
7 Hb_001341_170 0.0763871255 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
8 Hb_004607_050 0.0763982806 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
9 Hb_011485_070 0.0770902292 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
10 Hb_001014_030 0.0778329308 - - ATP binding protein, putative [Ricinus communis]
11 Hb_006938_080 0.078341751 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
12 Hb_007441_220 0.0788680152 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
13 Hb_000107_490 0.0794090915 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
14 Hb_172632_110 0.079890909 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
15 Hb_000002_010 0.080242373 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
16 Hb_000185_030 0.080545857 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
17 Hb_000840_250 0.0823904036 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
18 Hb_002276_130 0.0827354988 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
19 Hb_000710_060 0.0831187296 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
20 Hb_008770_030 0.0842234307 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]

Gene co-expression network

sample Hb_000866_170 Hb_000866_170 Hb_000245_040 Hb_000245_040 Hb_000866_170--Hb_000245_040 Hb_000297_010 Hb_000297_010 Hb_000866_170--Hb_000297_010 Hb_000395_190 Hb_000395_190 Hb_000866_170--Hb_000395_190 Hb_000890_210 Hb_000890_210 Hb_000866_170--Hb_000890_210 Hb_004724_150 Hb_004724_150 Hb_000866_170--Hb_004724_150 Hb_001341_170 Hb_001341_170 Hb_000866_170--Hb_001341_170 Hb_000107_490 Hb_000107_490 Hb_000245_040--Hb_000107_490 Hb_000245_040--Hb_000297_010 Hb_000245_040--Hb_004724_150 Hb_006938_080 Hb_006938_080 Hb_000245_040--Hb_006938_080 Hb_000245_040--Hb_000890_210 Hb_000185_030 Hb_000185_030 Hb_000297_010--Hb_000185_030 Hb_000297_010--Hb_004724_150 Hb_015934_040 Hb_015934_040 Hb_000297_010--Hb_015934_040 Hb_000041_100 Hb_000041_100 Hb_000297_010--Hb_000041_100 Hb_000840_250 Hb_000840_250 Hb_000297_010--Hb_000840_250 Hb_010128_080 Hb_010128_080 Hb_000395_190--Hb_010128_080 Hb_000260_270 Hb_000260_270 Hb_000395_190--Hb_000260_270 Hb_005731_130 Hb_005731_130 Hb_000395_190--Hb_005731_130 Hb_089032_040 Hb_089032_040 Hb_000395_190--Hb_089032_040 Hb_002078_130 Hb_002078_130 Hb_000395_190--Hb_002078_130 Hb_000099_080 Hb_000099_080 Hb_000395_190--Hb_000099_080 Hb_000890_210--Hb_000107_490 Hb_000890_210--Hb_001341_170 Hb_002213_070 Hb_002213_070 Hb_000890_210--Hb_002213_070 Hb_000083_120 Hb_000083_120 Hb_000890_210--Hb_000083_120 Hb_004117_310 Hb_004117_310 Hb_000890_210--Hb_004117_310 Hb_004724_150--Hb_001341_170 Hb_000028_180 Hb_000028_180 Hb_004724_150--Hb_000028_180 Hb_000556_160 Hb_000556_160 Hb_004724_150--Hb_000556_160 Hb_004724_150--Hb_000107_490 Hb_000225_040 Hb_000225_040 Hb_001341_170--Hb_000225_040 Hb_001341_170--Hb_000556_160 Hb_011485_070 Hb_011485_070 Hb_001341_170--Hb_011485_070 Hb_010618_010 Hb_010618_010 Hb_001341_170--Hb_010618_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.952964 1.41655 0.3862 1.12442 0.903104 1.25392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08635 1.26355 1.90064 1.56786 0.862873

CAGE analysis