Hb_000866_190

Information

Type -
Description -
Location Contig866: 145592-149247
Sequence    

Annotation

kegg
ID rcu:RCOM_1615240
description transcription factor, putative (EC:1.3.1.74)
nr
ID XP_002511859.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FN69
description Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1
trembl
ID B9RDS0
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1615240 PE=4 SV=1
Gene Ontology
ID GO:0003677
description basic helix-loop-helix regulatory family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60949: 147914-148102 , PASA_asmbl_60950: 145602-149163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_190 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_009554_030 0.0796176152 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
3 Hb_006469_090 0.0874652668 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
4 Hb_014250_010 0.0890726978 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
5 Hb_005766_010 0.0899967057 - - serine carboxypeptidase, putative [Ricinus communis]
6 Hb_015306_010 0.091094666 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
7 Hb_001135_010 0.1000361369 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
8 Hb_059000_010 0.1039861694 - - hypothetical protein JCGZ_17736 [Jatropha curcas]
9 Hb_015001_030 0.1055137026 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
10 Hb_000594_160 0.1057500834 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
11 Hb_007386_030 0.1082925086 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
12 Hb_021346_020 0.1091128593 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
13 Hb_007850_110 0.1093790264 - - MADS-box transcription factor 3 [Hevea brasiliensis]
14 Hb_000258_210 0.1140797803 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
15 Hb_000189_160 0.1158097297 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
16 Hb_014967_020 0.1170296815 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_001141_160 0.1177536519 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
18 Hb_017098_050 0.1183092806 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
19 Hb_000096_210 0.1197567426 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
20 Hb_004162_320 0.1203750758 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_190 Hb_000866_190 Hb_009554_030 Hb_009554_030 Hb_000866_190--Hb_009554_030 Hb_006469_090 Hb_006469_090 Hb_000866_190--Hb_006469_090 Hb_014250_010 Hb_014250_010 Hb_000866_190--Hb_014250_010 Hb_005766_010 Hb_005766_010 Hb_000866_190--Hb_005766_010 Hb_015306_010 Hb_015306_010 Hb_000866_190--Hb_015306_010 Hb_001135_010 Hb_001135_010 Hb_000866_190--Hb_001135_010 Hb_004122_060 Hb_004122_060 Hb_009554_030--Hb_004122_060 Hb_059000_010 Hb_059000_010 Hb_009554_030--Hb_059000_010 Hb_000096_210 Hb_000096_210 Hb_009554_030--Hb_000096_210 Hb_009554_030--Hb_014250_010 Hb_009554_030--Hb_015306_010 Hb_001439_010 Hb_001439_010 Hb_006469_090--Hb_001439_010 Hb_007850_110 Hb_007850_110 Hb_006469_090--Hb_007850_110 Hb_003607_140 Hb_003607_140 Hb_006469_090--Hb_003607_140 Hb_005663_090 Hb_005663_090 Hb_006469_090--Hb_005663_090 Hb_000680_070 Hb_000680_070 Hb_006469_090--Hb_000680_070 Hb_014250_010--Hb_000096_210 Hb_015001_030 Hb_015001_030 Hb_014250_010--Hb_015001_030 Hb_014250_010--Hb_005766_010 Hb_001638_150 Hb_001638_150 Hb_014250_010--Hb_001638_150 Hb_000594_160 Hb_000594_160 Hb_005766_010--Hb_000594_160 Hb_005766_010--Hb_000096_210 Hb_000017_320 Hb_000017_320 Hb_005766_010--Hb_000017_320 Hb_005731_070 Hb_005731_070 Hb_005766_010--Hb_005731_070 Hb_003106_110 Hb_003106_110 Hb_015306_010--Hb_003106_110 Hb_000398_140 Hb_000398_140 Hb_015306_010--Hb_000398_140 Hb_015306_010--Hb_004122_060 Hb_000258_210 Hb_000258_210 Hb_015306_010--Hb_000258_210 Hb_004162_320 Hb_004162_320 Hb_001135_010--Hb_004162_320 Hb_001135_010--Hb_015001_030 Hb_003506_010 Hb_003506_010 Hb_001135_010--Hb_003506_010 Hb_001135_010--Hb_014250_010 Hb_002918_120 Hb_002918_120 Hb_001135_010--Hb_002918_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.516684 16.4089 37.0659 35.181 0.207777 0.153964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0850194 0.0401408 0 41.8639 35.1242

CAGE analysis