Hb_000866_210

Information

Type transcription factor
Description TF Family: BES1
Location Contig866: 162723-170701
Sequence    

Annotation

kegg
ID rcu:RCOM_1615220
description Beta-amylase, putative (EC:3.2.1.2)
nr
ID XP_012083397.1
description PREDICTED: beta-amylase 7 isoform X1 [Jatropha curcas]
swissprot
ID O80831
description Beta-amylase 7 OS=Arabidopsis thaliana GN=BAM7 PE=2 SV=2
trembl
ID A0A067JXD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14402 PE=3 SV=1
Gene Ontology
ID GO:0005634
description beta-amylase 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60951: 162723-170020
cDNA
(Sanger)
(ID:Location)		 021_E21.ab1: 162723-163508 , 027_I13.ab1: 162723-163441

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_210 0.0 transcription factor TF Family: BES1 PREDICTED: beta-amylase 7 isoform X1 [Jatropha curcas]
2 Hb_002897_050 0.0724461086 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
3 Hb_052764_030 0.0781572364 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
4 Hb_009486_160 0.092589454 - - PREDICTED: metacaspase-1 [Jatropha curcas]
5 Hb_011631_010 0.100390458 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
6 Hb_003055_140 0.1049608173 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
7 Hb_011249_060 0.1083382082 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
8 Hb_004899_040 0.1111830763 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
9 Hb_002107_060 0.1116723787 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
10 Hb_000291_010 0.1122138144 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
11 Hb_023226_070 0.1128523716 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000373_230 0.1129716655 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
13 Hb_000638_280 0.1129876955 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
14 Hb_000375_290 0.1130363893 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_004526_010 0.1131312746 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
16 Hb_006615_030 0.1138058242 - - prolyl oligopeptidase family protein [Populus trichocarpa]
17 Hb_000094_090 0.114301959 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
18 Hb_003992_180 0.115039926 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
19 Hb_005834_040 0.1158192917 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
20 Hb_001427_150 0.1161281472 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_210 Hb_000866_210 Hb_002897_050 Hb_002897_050 Hb_000866_210--Hb_002897_050 Hb_052764_030 Hb_052764_030 Hb_000866_210--Hb_052764_030 Hb_009486_160 Hb_009486_160 Hb_000866_210--Hb_009486_160 Hb_011631_010 Hb_011631_010 Hb_000866_210--Hb_011631_010 Hb_003055_140 Hb_003055_140 Hb_000866_210--Hb_003055_140 Hb_011249_060 Hb_011249_060 Hb_000866_210--Hb_011249_060 Hb_002897_050--Hb_011631_010 Hb_000638_280 Hb_000638_280 Hb_002897_050--Hb_000638_280 Hb_002107_060 Hb_002107_060 Hb_002897_050--Hb_002107_060 Hb_000084_240 Hb_000084_240 Hb_002897_050--Hb_000084_240 Hb_000045_260 Hb_000045_260 Hb_002897_050--Hb_000045_260 Hb_052764_030--Hb_009486_160 Hb_052764_030--Hb_002897_050 Hb_002301_170 Hb_002301_170 Hb_052764_030--Hb_002301_170 Hb_001104_170 Hb_001104_170 Hb_052764_030--Hb_001104_170 Hb_000291_010 Hb_000291_010 Hb_052764_030--Hb_000291_010 Hb_009486_160--Hb_011249_060 Hb_002812_010 Hb_002812_010 Hb_009486_160--Hb_002812_010 Hb_001862_110 Hb_001862_110 Hb_009486_160--Hb_001862_110 Hb_004319_070 Hb_004319_070 Hb_009486_160--Hb_004319_070 Hb_000363_120 Hb_000363_120 Hb_009486_160--Hb_000363_120 Hb_004899_040 Hb_004899_040 Hb_009486_160--Hb_004899_040 Hb_011631_010--Hb_000045_260 Hb_005499_010 Hb_005499_010 Hb_011631_010--Hb_005499_010 Hb_011631_010--Hb_002107_060 Hb_011631_010--Hb_000638_280 Hb_011631_010--Hb_000084_240 Hb_000442_010 Hb_000442_010 Hb_003055_140--Hb_000442_010 Hb_003728_040 Hb_003728_040 Hb_003055_140--Hb_003728_040 Hb_001629_060 Hb_001629_060 Hb_003055_140--Hb_001629_060 Hb_003055_140--Hb_001104_170 Hb_000953_050 Hb_000953_050 Hb_003055_140--Hb_000953_050 Hb_001427_150 Hb_001427_150 Hb_011249_060--Hb_001427_150 Hb_009302_030 Hb_009302_030 Hb_011249_060--Hb_009302_030 Hb_011249_060--Hb_004899_040 Hb_002903_140 Hb_002903_140 Hb_011249_060--Hb_002903_140 Hb_015183_100 Hb_015183_100 Hb_011249_060--Hb_015183_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.09379 32.2078 17.2107 7.26336 8.04943 7.76271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.43462 6.96235 8.14898 7.62758 9.87159

CAGE analysis