Hb_000866_240

Information

Type -
Description -
Location Contig866: 177262-179966
Sequence    

Annotation

kegg
ID cam:101514831
description 60S ribosomal protein L36-2-like
nr
ID XP_012083401.1
description PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
swissprot
ID Q9M352
description 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1
trembl
ID A0A067K9Z5
description 60S ribosomal protein L36 OS=Jatropha curcas GN=JCGZ_14405 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l36-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60958: 179193-179405 , PASA_asmbl_60959: 179472-183230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_240 0.0 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
2 Hb_001863_430 0.1032484347 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
3 Hb_009476_020 0.1081562219 - - tryptophan biosynthesis protein, putative [Ricinus communis]
4 Hb_000155_160 0.1083027439 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
5 Hb_000035_370 0.1094594112 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000676_140 0.1105223266 - - structural constituent of ribosome, putative [Ricinus communis]
7 Hb_000506_070 0.1146801971 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
8 Hb_001016_150 0.119286394 - - Rop1 [Hevea brasiliensis]
9 Hb_000327_230 0.1193570509 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
10 Hb_000321_160 0.1209509345 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
11 Hb_000011_570 0.1227132836 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
12 Hb_000331_470 0.123351432 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
13 Hb_017987_050 0.1242756055 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
14 Hb_001691_140 0.1278459315 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
15 Hb_002811_170 0.1278948128 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
16 Hb_007245_080 0.1281460207 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
17 Hb_002235_080 0.1292451224 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
18 Hb_010815_030 0.1304506764 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
19 Hb_000236_390 0.1307630602 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
20 Hb_001476_080 0.1309226813 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000866_240 Hb_000866_240 Hb_001863_430 Hb_001863_430 Hb_000866_240--Hb_001863_430 Hb_009476_020 Hb_009476_020 Hb_000866_240--Hb_009476_020 Hb_000155_160 Hb_000155_160 Hb_000866_240--Hb_000155_160 Hb_000035_370 Hb_000035_370 Hb_000866_240--Hb_000035_370 Hb_000676_140 Hb_000676_140 Hb_000866_240--Hb_000676_140 Hb_000506_070 Hb_000506_070 Hb_000866_240--Hb_000506_070 Hb_001016_150 Hb_001016_150 Hb_001863_430--Hb_001016_150 Hb_001863_430--Hb_000506_070 Hb_002078_140 Hb_002078_140 Hb_001863_430--Hb_002078_140 Hb_002811_170 Hb_002811_170 Hb_001863_430--Hb_002811_170 Hb_000327_230 Hb_000327_230 Hb_001863_430--Hb_000327_230 Hb_001691_140 Hb_001691_140 Hb_001863_430--Hb_001691_140 Hb_007245_080 Hb_007245_080 Hb_009476_020--Hb_007245_080 Hb_009476_020--Hb_000506_070 Hb_000735_040 Hb_000735_040 Hb_009476_020--Hb_000735_040 Hb_174865_010 Hb_174865_010 Hb_009476_020--Hb_174865_010 Hb_000676_160 Hb_000676_160 Hb_009476_020--Hb_000676_160 Hb_003018_020 Hb_003018_020 Hb_009476_020--Hb_003018_020 Hb_000419_020 Hb_000419_020 Hb_000155_160--Hb_000419_020 Hb_000085_350 Hb_000085_350 Hb_000155_160--Hb_000085_350 Hb_007747_050 Hb_007747_050 Hb_000155_160--Hb_007747_050 Hb_000847_060 Hb_000847_060 Hb_000155_160--Hb_000847_060 Hb_000155_160--Hb_001863_430 Hb_000155_160--Hb_000327_230 Hb_001476_080 Hb_001476_080 Hb_000035_370--Hb_001476_080 Hb_000920_110 Hb_000920_110 Hb_000035_370--Hb_000920_110 Hb_002768_030 Hb_002768_030 Hb_000035_370--Hb_002768_030 Hb_000001_060 Hb_000001_060 Hb_000035_370--Hb_000001_060 Hb_006831_130 Hb_006831_130 Hb_000035_370--Hb_006831_130 Hb_026053_020 Hb_026053_020 Hb_000035_370--Hb_026053_020 Hb_000011_570 Hb_000011_570 Hb_000676_140--Hb_000011_570 Hb_004709_010 Hb_004709_010 Hb_000676_140--Hb_004709_010 Hb_014720_040 Hb_014720_040 Hb_000676_140--Hb_014720_040 Hb_000676_140--Hb_001016_150 Hb_000676_140--Hb_001863_430 Hb_000506_070--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_000506_070--Hb_000062_650 Hb_000506_070--Hb_003018_020 Hb_003226_100 Hb_003226_100 Hb_000506_070--Hb_003226_100 Hb_001141_140 Hb_001141_140 Hb_000506_070--Hb_001141_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.76438 10.6093 12.3971 7.81106 5.9744 8.07917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5319 35.2893 5.12564 8.72272 7.3152

CAGE analysis