Hb_000866_250

Information

Type -
Description -
Location Contig866: 181812-187771
Sequence    

Annotation

kegg
ID rcu:RCOM_1615160
description acyl-CoA thioesterase, putative (EC:3.1.2.2)
nr
ID XP_002511851.1
description acyl-CoA thioesterase, putative [Ricinus communis]
swissprot
ID Q8VHK0
description Acyl-coenzyme A thioesterase 8 OS=Rattus norvegicus GN=Acot8 PE=2 SV=1
trembl
ID B9RDR2
description Acyl-CoA thioesterase, putative OS=Ricinus communis GN=RCOM_1615160 PE=4 SV=1
Gene Ontology
ID GO:0016290
description acyl-coenzyme a thioesterase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60959: 179472-183230 , PASA_asmbl_60960: 186151-187459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_250 0.0 - - acyl-CoA thioesterase, putative [Ricinus communis]
2 Hb_001141_290 0.2343811091 - - -
3 Hb_001080_010 0.2989472578 - - -
4 Hb_014720_090 0.3103840501 - - -
5 Hb_003095_080 0.3137416493 - - -
6 Hb_185111_010 0.318024032 - - -
7 Hb_010921_040 0.3218399527 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
8 Hb_007101_230 0.3230706268 - - leucine rich repeat-containing protein, putative [Ricinus communis]
9 Hb_112440_010 0.3240136878 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
10 Hb_007672_030 0.3294773712 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
11 Hb_000718_050 0.3301049078 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
12 Hb_007181_030 0.3321062361 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
13 Hb_004267_030 0.332524154 - - cytochrome P450, putative [Ricinus communis]
14 Hb_001946_020 0.3331155307 - - hypothetical protein RCOM_0224470 [Ricinus communis]
15 Hb_008054_060 0.338824694 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
16 Hb_000318_090 0.3460814065 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
17 Hb_012371_010 0.3499925913 - - PREDICTED: uncharacterized protein LOC105641615 [Jatropha curcas]
18 Hb_000364_190 0.3501759705 - - -
19 Hb_007885_050 0.3503723996 - - PREDICTED: lignin-forming anionic peroxidase-like [Jatropha curcas]
20 Hb_007157_030 0.3507589621 - - PREDICTED: protein LURP-one-related 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_000866_250 Hb_000866_250 Hb_001141_290 Hb_001141_290 Hb_000866_250--Hb_001141_290 Hb_001080_010 Hb_001080_010 Hb_000866_250--Hb_001080_010 Hb_014720_090 Hb_014720_090 Hb_000866_250--Hb_014720_090 Hb_003095_080 Hb_003095_080 Hb_000866_250--Hb_003095_080 Hb_185111_010 Hb_185111_010 Hb_000866_250--Hb_185111_010 Hb_010921_040 Hb_010921_040 Hb_000866_250--Hb_010921_040 Hb_001141_290--Hb_014720_090 Hb_094890_010 Hb_094890_010 Hb_001141_290--Hb_094890_010 Hb_003055_150 Hb_003055_150 Hb_001141_290--Hb_003055_150 Hb_011081_040 Hb_011081_040 Hb_001141_290--Hb_011081_040 Hb_001141_290--Hb_001080_010 Hb_001959_150 Hb_001959_150 Hb_001080_010--Hb_001959_150 Hb_007808_020 Hb_007808_020 Hb_001080_010--Hb_007808_020 Hb_000350_080 Hb_000350_080 Hb_001080_010--Hb_000350_080 Hb_005072_010 Hb_005072_010 Hb_001080_010--Hb_005072_010 Hb_000068_030 Hb_000068_030 Hb_001080_010--Hb_000068_030 Hb_000594_090 Hb_000594_090 Hb_001080_010--Hb_000594_090 Hb_007672_030 Hb_007672_030 Hb_014720_090--Hb_007672_030 Hb_014720_090--Hb_003055_150 Hb_163206_010 Hb_163206_010 Hb_014720_090--Hb_163206_010 Hb_014720_090--Hb_094890_010 Hb_004267_030 Hb_004267_030 Hb_003095_080--Hb_004267_030 Hb_001946_020 Hb_001946_020 Hb_003095_080--Hb_001946_020 Hb_016875_010 Hb_016875_010 Hb_003095_080--Hb_016875_010 Hb_007181_030 Hb_007181_030 Hb_003095_080--Hb_007181_030 Hb_008054_060 Hb_008054_060 Hb_003095_080--Hb_008054_060 Hb_112440_010 Hb_112440_010 Hb_003095_080--Hb_112440_010 Hb_000318_090 Hb_000318_090 Hb_185111_010--Hb_000318_090 Hb_000718_050 Hb_000718_050 Hb_185111_010--Hb_000718_050 Hb_000892_020 Hb_000892_020 Hb_185111_010--Hb_000892_020 Hb_001729_040 Hb_001729_040 Hb_185111_010--Hb_001729_040 Hb_185111_010--Hb_112440_010 Hb_185111_010--Hb_007181_030 Hb_000110_380 Hb_000110_380 Hb_010921_040--Hb_000110_380 Hb_064122_010 Hb_064122_010 Hb_010921_040--Hb_064122_010 Hb_001170_010 Hb_001170_010 Hb_010921_040--Hb_001170_010 Hb_004724_450 Hb_004724_450 Hb_010921_040--Hb_004724_450 Hb_010921_040--Hb_003095_080 Hb_010921_040--Hb_004267_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0990021 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0839455 0.05233 0.0783144 0

CAGE analysis