Hb_000866_260

Information

Type -
Description -
Location Contig866: 189314-191580
Sequence    

Annotation

kegg
ID rcu:RCOM_1615150
description Protein AFR, putative
nr
ID XP_012083405.1
description PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
swissprot
ID Q9M2C9
description F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana GN=SKIP4 PE=1 SV=1
trembl
ID A0A067JXE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14407 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60961: 189145-189262 , PASA_asmbl_60962: 189322-191515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_260 0.0 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
2 Hb_000917_060 0.0526292928 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
3 Hb_007389_010 0.0584322367 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
4 Hb_017358_030 0.0634707929 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
5 Hb_002013_020 0.0684171836 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
6 Hb_000329_320 0.0688774127 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
7 Hb_000753_240 0.0714184746 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
8 Hb_002235_250 0.0722163822 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
9 Hb_000866_010 0.0731408367 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000205_190 0.0737388305 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
11 Hb_000614_160 0.0739323702 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
12 Hb_000137_040 0.0764393993 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
13 Hb_004970_190 0.079104797 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_156279_020 0.0827043573 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
15 Hb_007007_120 0.0827686557 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
16 Hb_001163_050 0.0828689216 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
17 Hb_008221_180 0.0831511662 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
18 Hb_001902_030 0.0832406252 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
19 Hb_002600_090 0.0841221956 - - ATP binding protein, putative [Ricinus communis]
20 Hb_003513_010 0.0850572525 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000866_260 Hb_000866_260 Hb_000917_060 Hb_000917_060 Hb_000866_260--Hb_000917_060 Hb_007389_010 Hb_007389_010 Hb_000866_260--Hb_007389_010 Hb_017358_030 Hb_017358_030 Hb_000866_260--Hb_017358_030 Hb_002013_020 Hb_002013_020 Hb_000866_260--Hb_002013_020 Hb_000329_320 Hb_000329_320 Hb_000866_260--Hb_000329_320 Hb_000753_240 Hb_000753_240 Hb_000866_260--Hb_000753_240 Hb_000917_060--Hb_000329_320 Hb_000917_060--Hb_017358_030 Hb_032202_140 Hb_032202_140 Hb_000917_060--Hb_032202_140 Hb_001163_050 Hb_001163_050 Hb_000917_060--Hb_001163_050 Hb_000917_060--Hb_002013_020 Hb_000614_160 Hb_000614_160 Hb_007389_010--Hb_000614_160 Hb_007389_010--Hb_017358_030 Hb_000866_010 Hb_000866_010 Hb_007389_010--Hb_000866_010 Hb_002235_250 Hb_002235_250 Hb_007389_010--Hb_002235_250 Hb_032264_070 Hb_032264_070 Hb_007389_010--Hb_032264_070 Hb_000165_250 Hb_000165_250 Hb_017358_030--Hb_000165_250 Hb_002739_100 Hb_002739_100 Hb_017358_030--Hb_002739_100 Hb_000029_050 Hb_000029_050 Hb_017358_030--Hb_000029_050 Hb_004052_080 Hb_004052_080 Hb_002013_020--Hb_004052_080 Hb_003513_010 Hb_003513_010 Hb_002013_020--Hb_003513_010 Hb_001456_060 Hb_001456_060 Hb_002013_020--Hb_001456_060 Hb_002013_020--Hb_001163_050 Hb_002013_020--Hb_032202_140 Hb_002876_230 Hb_002876_230 Hb_002013_020--Hb_002876_230 Hb_000329_320--Hb_032264_070 Hb_005269_070 Hb_005269_070 Hb_000329_320--Hb_005269_070 Hb_002490_020 Hb_002490_020 Hb_000329_320--Hb_002490_020 Hb_000883_020 Hb_000883_020 Hb_000329_320--Hb_000883_020 Hb_003029_070 Hb_003029_070 Hb_000753_240--Hb_003029_070 Hb_004970_190 Hb_004970_190 Hb_000753_240--Hb_004970_190 Hb_000753_240--Hb_000866_010 Hb_000753_240--Hb_002013_020 Hb_000804_040 Hb_000804_040 Hb_000753_240--Hb_000804_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7444 8.50617 12.5483 8.18891 11.5916 10.1492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1798 15.1601 15.7223 7.8069 14.8325

CAGE analysis