Hb_000866_270

Information

Type -
Description -
Location Contig866: 192281-194350
Sequence    

Annotation

kegg
ID rcu:RCOM_1615140
description hypothetical protein
nr
ID XP_012083407.1
description PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14408 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60964: 192327-194170
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_270 0.0 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
2 Hb_001259_090 0.0522495068 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
3 Hb_002007_060 0.055111428 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
4 Hb_023226_040 0.0571549096 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
5 Hb_001159_140 0.0616306043 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
6 Hb_028995_040 0.0620753577 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
7 Hb_000661_250 0.066097522 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
8 Hb_003078_040 0.0679314208 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
9 Hb_004657_050 0.0732152716 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
10 Hb_010661_030 0.0733314385 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
11 Hb_001138_050 0.0753948978 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
12 Hb_005000_210 0.076782968 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
13 Hb_002301_140 0.077085003 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
14 Hb_001252_110 0.0774897808 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
15 Hb_001540_010 0.0784328365 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
16 Hb_000698_030 0.0793105854 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
17 Hb_000000_160 0.0800019875 - - PREDICTED: membrin-11 [Jatropha curcas]
18 Hb_096563_010 0.0804136748 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
19 Hb_000141_040 0.0814521133 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
20 Hb_005993_040 0.0815523445 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_270 Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_000866_270--Hb_001259_090 Hb_002007_060 Hb_002007_060 Hb_000866_270--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000866_270--Hb_023226_040 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_028995_040 Hb_028995_040 Hb_000866_270--Hb_028995_040 Hb_000661_250 Hb_000661_250 Hb_000866_270--Hb_000661_250 Hb_001259_090--Hb_000661_250 Hb_096563_010 Hb_096563_010 Hb_001259_090--Hb_096563_010 Hb_001259_090--Hb_002007_060 Hb_000059_330 Hb_000059_330 Hb_001259_090--Hb_000059_330 Hb_000656_400 Hb_000656_400 Hb_001259_090--Hb_000656_400 Hb_002007_060--Hb_023226_040 Hb_001301_160 Hb_001301_160 Hb_002007_060--Hb_001301_160 Hb_000000_160 Hb_000000_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_000023_230 Hb_000023_230 Hb_023226_040--Hb_000023_230 Hb_004657_050 Hb_004657_050 Hb_023226_040--Hb_004657_050 Hb_023226_040--Hb_000000_160 Hb_023226_040--Hb_028995_040 Hb_005357_030 Hb_005357_030 Hb_001159_140--Hb_005357_030 Hb_007590_050 Hb_007590_050 Hb_001159_140--Hb_007590_050 Hb_003126_080 Hb_003126_080 Hb_001159_140--Hb_003126_080 Hb_001766_110 Hb_001766_110 Hb_001159_140--Hb_001766_110 Hb_001159_140--Hb_001259_090 Hb_001552_020 Hb_001552_020 Hb_028995_040--Hb_001552_020 Hb_004491_010 Hb_004491_010 Hb_028995_040--Hb_004491_010 Hb_028995_040--Hb_004657_050 Hb_003078_040 Hb_003078_040 Hb_028995_040--Hb_003078_040 Hb_002301_140 Hb_002301_140 Hb_028995_040--Hb_002301_140 Hb_000661_250--Hb_096563_010 Hb_000462_140 Hb_000462_140 Hb_000661_250--Hb_000462_140 Hb_001635_170 Hb_001635_170 Hb_000661_250--Hb_001635_170 Hb_000661_250--Hb_002007_060 Hb_002233_150 Hb_002233_150 Hb_000661_250--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1023 5.1322 4.06393 3.75113 8.2986 7.11386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1149 13.3452 7.11589 4.34263 2.56195

CAGE analysis