Hb_000866_300

Information

Type -
Description -
Location Contig866: 206879-209378
Sequence    

Annotation

kegg
ID cic:CICLE_v10023145mg
description hypothetical protein
nr
ID XP_006445065.1
description hypothetical protein CICLE_v10023145mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID A0A067H2P8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034916mg PE=4 SV=1
Gene Ontology
ID GO:0005739
description system protein a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60967: 206874-208684
cDNA
(Sanger)
(ID:Location)		 008_D07.ab1: 206878-208674 , 014_D09.ab1: 206878-208675 , 023_L01.ab1: 206878-208675

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_300 0.0 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
2 Hb_001951_110 0.0600962166 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
3 Hb_001804_040 0.0648946392 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004204_030 0.069363464 - - unknown [Populus trichocarpa]
5 Hb_000977_080 0.0704979024 - - type II inositol 5-phosphatase, putative [Ricinus communis]
6 Hb_000392_270 0.0788371145 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
7 Hb_000260_050 0.0846343452 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
8 Hb_003878_190 0.0859099731 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
9 Hb_001623_330 0.0879633397 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
10 Hb_000045_130 0.0893874772 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
11 Hb_000056_340 0.0910101107 - - 60S ribosomal protein L34A [Hevea brasiliensis]
12 Hb_001369_650 0.0930896633 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
13 Hb_054301_010 0.0943425133 - - hypothetical protein EUTSA_v10006737mg [Eutrema salsugineum]
14 Hb_003001_060 0.0943468634 - - wound-responsive family protein [Populus trichocarpa]
15 Hb_024835_030 0.0946981675 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
16 Hb_027472_180 0.0950963514 - - hypothetical protein L484_016229 [Morus notabilis]
17 Hb_157854_010 0.0952995055 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
18 Hb_000318_380 0.096467604 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
19 Hb_000376_050 0.1010504878 - - polyadenylate-binding protein, putative [Ricinus communis]
20 Hb_001828_090 0.1026064751 - - prohibitin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000866_300 Hb_000866_300 Hb_001951_110 Hb_001951_110 Hb_000866_300--Hb_001951_110 Hb_001804_040 Hb_001804_040 Hb_000866_300--Hb_001804_040 Hb_004204_030 Hb_004204_030 Hb_000866_300--Hb_004204_030 Hb_000977_080 Hb_000977_080 Hb_000866_300--Hb_000977_080 Hb_000392_270 Hb_000392_270 Hb_000866_300--Hb_000392_270 Hb_000260_050 Hb_000260_050 Hb_000866_300--Hb_000260_050 Hb_001951_110--Hb_001804_040 Hb_000417_110 Hb_000417_110 Hb_001951_110--Hb_000417_110 Hb_001951_110--Hb_004204_030 Hb_001951_110--Hb_000392_270 Hb_002529_100 Hb_002529_100 Hb_001951_110--Hb_002529_100 Hb_001804_040--Hb_004204_030 Hb_001754_150 Hb_001754_150 Hb_001804_040--Hb_001754_150 Hb_001019_090 Hb_001019_090 Hb_001804_040--Hb_001019_090 Hb_001366_230 Hb_001366_230 Hb_001804_040--Hb_001366_230 Hb_006569_020 Hb_006569_020 Hb_004204_030--Hb_006569_020 Hb_004204_030--Hb_000392_270 Hb_001514_020 Hb_001514_020 Hb_004204_030--Hb_001514_020 Hb_000977_080--Hb_000392_270 Hb_003551_020 Hb_003551_020 Hb_000977_080--Hb_003551_020 Hb_000045_130 Hb_000045_130 Hb_000977_080--Hb_000045_130 Hb_004645_050 Hb_004645_050 Hb_000977_080--Hb_004645_050 Hb_001369_650 Hb_001369_650 Hb_000977_080--Hb_001369_650 Hb_000019_230 Hb_000019_230 Hb_000977_080--Hb_000019_230 Hb_000392_270--Hb_001369_650 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_000392_270--Hb_003551_020 Hb_003878_190 Hb_003878_190 Hb_000392_270--Hb_003878_190 Hb_011360_140 Hb_011360_140 Hb_000392_270--Hb_011360_140 Hb_007747_090 Hb_007747_090 Hb_000260_050--Hb_007747_090 Hb_000483_160 Hb_000483_160 Hb_000260_050--Hb_000483_160 Hb_004899_220 Hb_004899_220 Hb_000260_050--Hb_004899_220 Hb_002477_240 Hb_002477_240 Hb_000260_050--Hb_002477_240 Hb_000260_050--Hb_000977_080 Hb_000260_050--Hb_001754_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.4366 17.1629 9.84163 6.40798 72.677 55.3175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.7577 90.5349 44.4008 23.3089 6.86991

CAGE analysis