Hb_000866_320

Information

Type -
Description -
Location Contig866: 212265-216369
Sequence    

Annotation

kegg
ID rcu:RCOM_1615080
description receptor protein kinase, putative
nr
ID XP_002511845.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID Q9FHD7
description Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1
trembl
ID B9RDQ6
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1615080 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at5g41260

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60969: 212256-215811 , PASA_asmbl_60970: 213564-215811 , PASA_asmbl_60971: 215899-216309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_320 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_009627_020 0.1120081515 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
3 Hb_007625_030 0.1180506419 - - unknown [Medicago truncatula]
4 Hb_009838_120 0.1184432742 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
5 Hb_002999_080 0.1268844465 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
6 Hb_000002_360 0.1296081271 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
7 Hb_004659_100 0.1357025955 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003647_040 0.1358674869 - - conserved hypothetical protein [Ricinus communis]
9 Hb_024868_010 0.1391458186 - - protein kinase, putative [Ricinus communis]
10 Hb_002025_050 0.1394530247 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000069_520 0.1421184423 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
12 Hb_000032_340 0.1465560258 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
13 Hb_000479_230 0.1524888948 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
14 Hb_002119_040 0.1546625072 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_002374_060 0.1551274927 - - amino acid transporter, putative [Ricinus communis]
16 Hb_026549_050 0.1554465065 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
17 Hb_008021_040 0.155820711 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
18 Hb_003411_020 0.1568733001 - - alpha-glucosidase, putative [Ricinus communis]
19 Hb_002324_040 0.1570977627 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
20 Hb_135720_010 0.1574396351 - - hypothetical protein JCGZ_17857 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_320 Hb_000866_320 Hb_009627_020 Hb_009627_020 Hb_000866_320--Hb_009627_020 Hb_007625_030 Hb_007625_030 Hb_000866_320--Hb_007625_030 Hb_009838_120 Hb_009838_120 Hb_000866_320--Hb_009838_120 Hb_002999_080 Hb_002999_080 Hb_000866_320--Hb_002999_080 Hb_000002_360 Hb_000002_360 Hb_000866_320--Hb_000002_360 Hb_004659_100 Hb_004659_100 Hb_000866_320--Hb_004659_100 Hb_009627_020--Hb_009838_120 Hb_000479_230 Hb_000479_230 Hb_009627_020--Hb_000479_230 Hb_024868_010 Hb_024868_010 Hb_009627_020--Hb_024868_010 Hb_005679_120 Hb_005679_120 Hb_009627_020--Hb_005679_120 Hb_009627_020--Hb_004659_100 Hb_000631_100 Hb_000631_100 Hb_009627_020--Hb_000631_100 Hb_002236_010 Hb_002236_010 Hb_007625_030--Hb_002236_010 Hb_002553_070 Hb_002553_070 Hb_007625_030--Hb_002553_070 Hb_023956_010 Hb_023956_010 Hb_007625_030--Hb_023956_010 Hb_007625_030--Hb_009627_020 Hb_004079_100 Hb_004079_100 Hb_007625_030--Hb_004079_100 Hb_000454_200 Hb_000454_200 Hb_007625_030--Hb_000454_200 Hb_009838_120--Hb_024868_010 Hb_009838_120--Hb_004659_100 Hb_008021_040 Hb_008021_040 Hb_009838_120--Hb_008021_040 Hb_009838_120--Hb_005679_120 Hb_139461_010 Hb_139461_010 Hb_009838_120--Hb_139461_010 Hb_000997_240 Hb_000997_240 Hb_002999_080--Hb_000997_240 Hb_003411_020 Hb_003411_020 Hb_002999_080--Hb_003411_020 Hb_155444_010 Hb_155444_010 Hb_002999_080--Hb_155444_010 Hb_000645_160 Hb_000645_160 Hb_002999_080--Hb_000645_160 Hb_000563_630 Hb_000563_630 Hb_002999_080--Hb_000563_630 Hb_026549_050 Hb_026549_050 Hb_000002_360--Hb_026549_050 Hb_000832_280 Hb_000832_280 Hb_000002_360--Hb_000832_280 Hb_001433_160 Hb_001433_160 Hb_000002_360--Hb_001433_160 Hb_003387_050 Hb_003387_050 Hb_000002_360--Hb_003387_050 Hb_001922_060 Hb_001922_060 Hb_000002_360--Hb_001922_060 Hb_033053_020 Hb_033053_020 Hb_004659_100--Hb_033053_020 Hb_002897_030 Hb_002897_030 Hb_004659_100--Hb_002897_030 Hb_004659_100--Hb_024868_010 Hb_002325_050 Hb_002325_050 Hb_004659_100--Hb_002325_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.276577 5.17154 3.98996 13.2568 0.108988 0.0736747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.16323 0.568772 0.139058 6.03106 1.39467

CAGE analysis