Hb_000866_340

Information

Type -
Description -
Location Contig866: 238242-243020
Sequence    

Annotation

kegg
ID rcu:RCOM_1615060
description DNA binding protein, putative
nr
ID XP_002511843.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID O80834
description AT-hook motif nuclear-localized protein 9 OS=Arabidopsis thaliana GN=AHL9 PE=2 SV=1
trembl
ID B9RDQ4
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1615060 PE=4 SV=1
Gene Ontology
ID GO:0003677
description at-hook motif nuclear-localized protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60972: 237711-242857 , PASA_asmbl_60973: 242034-242395 , PASA_asmbl_60974: 237711-242857
cDNA
(Sanger)
(ID:Location)		 018_K24.ab1: 238076-238949

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_340 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_001221_200 0.1361269416 - - -
3 Hb_000977_290 0.1422963789 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
4 Hb_015531_030 0.1505480139 - - conserved hypothetical protein [Ricinus communis]
5 Hb_150651_020 0.1686635976 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_001597_020 0.1717802285 - - PREDICTED: uncharacterized protein LOC105629846 isoform X2 [Jatropha curcas]
7 Hb_004705_070 0.1783685193 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
8 Hb_000505_080 0.1805876039 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
9 Hb_005656_070 0.1848095366 - - PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_164926_010 0.1865539381 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
11 Hb_000260_590 0.1866490556 - - electron transporter, putative [Ricinus communis]
12 Hb_005063_080 0.190609981 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
13 Hb_004052_180 0.1928300833 - - PREDICTED: protein COBRA-like [Jatropha curcas]
14 Hb_002105_010 0.1941190604 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010984_020 0.1958359108 - - Translation factor GUF1 like, chloroplastic [Glycine soja]
16 Hb_000959_300 0.1959013686 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
17 Hb_002488_010 0.1962210769 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
18 Hb_002400_010 0.1963396537 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
19 Hb_004710_020 0.1967094508 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
20 Hb_188063_030 0.197167219 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_340 Hb_000866_340 Hb_001221_200 Hb_001221_200 Hb_000866_340--Hb_001221_200 Hb_000977_290 Hb_000977_290 Hb_000866_340--Hb_000977_290 Hb_015531_030 Hb_015531_030 Hb_000866_340--Hb_015531_030 Hb_150651_020 Hb_150651_020 Hb_000866_340--Hb_150651_020 Hb_001597_020 Hb_001597_020 Hb_000866_340--Hb_001597_020 Hb_004705_070 Hb_004705_070 Hb_000866_340--Hb_004705_070 Hb_181838_010 Hb_181838_010 Hb_001221_200--Hb_181838_010 Hb_001221_190 Hb_001221_190 Hb_001221_200--Hb_001221_190 Hb_001221_200--Hb_000977_290 Hb_000261_400 Hb_000261_400 Hb_001221_200--Hb_000261_400 Hb_005063_080 Hb_005063_080 Hb_001221_200--Hb_005063_080 Hb_010984_020 Hb_010984_020 Hb_000977_290--Hb_010984_020 Hb_000959_300 Hb_000959_300 Hb_000977_290--Hb_000959_300 Hb_007192_020 Hb_007192_020 Hb_000977_290--Hb_007192_020 Hb_002488_010 Hb_002488_010 Hb_000977_290--Hb_002488_010 Hb_004710_020 Hb_004710_020 Hb_000977_290--Hb_004710_020 Hb_001140_180 Hb_001140_180 Hb_000977_290--Hb_001140_180 Hb_001959_240 Hb_001959_240 Hb_015531_030--Hb_001959_240 Hb_164926_010 Hb_164926_010 Hb_015531_030--Hb_164926_010 Hb_002105_010 Hb_002105_010 Hb_015531_030--Hb_002105_010 Hb_001408_030 Hb_001408_030 Hb_015531_030--Hb_001408_030 Hb_008092_050 Hb_008092_050 Hb_015531_030--Hb_008092_050 Hb_004466_050 Hb_004466_050 Hb_015531_030--Hb_004466_050 Hb_001001_120 Hb_001001_120 Hb_150651_020--Hb_001001_120 Hb_150651_020--Hb_001597_020 Hb_150651_020--Hb_004705_070 Hb_126933_020 Hb_126933_020 Hb_150651_020--Hb_126933_020 Hb_004635_070 Hb_004635_070 Hb_150651_020--Hb_004635_070 Hb_007894_190 Hb_007894_190 Hb_150651_020--Hb_007894_190 Hb_001597_020--Hb_004705_070 Hb_001597_020--Hb_001001_120 Hb_009692_040 Hb_009692_040 Hb_001597_020--Hb_009692_040 Hb_001597_020--Hb_164926_010 Hb_001365_030 Hb_001365_030 Hb_001597_020--Hb_001365_030 Hb_050847_040 Hb_050847_040 Hb_004705_070--Hb_050847_040 Hb_004705_070--Hb_126933_020 Hb_010683_030 Hb_010683_030 Hb_004705_070--Hb_010683_030 Hb_003894_060 Hb_003894_060 Hb_004705_070--Hb_003894_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.84249 2.36613 30.05 21.9008 6.45101 15.1251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37041 0.530856 0.661686 6.24661 26.7969

CAGE analysis