Hb_000866_410

Information

Type -
Description -
Location Contig866: 275616-283159
Sequence    

Annotation

kegg
ID rcu:RCOM_1614770
description protein with unknown function
nr
ID KDP28651.1
description hypothetical protein JCGZ_14422 [Jatropha curcas]
swissprot
ID Q28FE8
description tRNA-specific adenosine deaminase 1 OS=Xenopus tropicalis GN=adat1 PE=2 SV=1
trembl
ID A0A067JXF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14422 PE=4 SV=1
Gene Ontology
ID GO:0003723
description trna-specific adenosine deaminase 1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60982: 276658-277286 , PASA_asmbl_60983: 277961-278376 , PASA_asmbl_60985: 279546-279958 , PASA_asmbl_60986: 281789-283433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_410 0.0 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
2 Hb_012384_030 0.0570450595 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
3 Hb_002217_110 0.0655894372 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
4 Hb_008453_140 0.0677225884 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
5 Hb_120410_010 0.0689054627 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
6 Hb_029142_060 0.0724224087 - - PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha curcas]
7 Hb_004093_090 0.0734311181 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
8 Hb_002013_020 0.0752849256 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
9 Hb_000649_070 0.0760433364 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
10 Hb_153553_030 0.0780339916 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
11 Hb_003001_080 0.0783916451 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
12 Hb_001776_060 0.0787586431 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
13 Hb_152175_010 0.0794512256 - - Protein grpE, putative [Ricinus communis]
14 Hb_032202_140 0.0803116284 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
15 Hb_001456_060 0.0823147073 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
16 Hb_001163_050 0.0826431983 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
17 Hb_000453_050 0.0835957967 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
18 Hb_027295_050 0.0837091529 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
19 Hb_020367_050 0.0838138291 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
20 Hb_000201_100 0.0838393931 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000866_410 Hb_000866_410 Hb_012384_030 Hb_012384_030 Hb_000866_410--Hb_012384_030 Hb_002217_110 Hb_002217_110 Hb_000866_410--Hb_002217_110 Hb_008453_140 Hb_008453_140 Hb_000866_410--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_000866_410--Hb_120410_010 Hb_029142_060 Hb_029142_060 Hb_000866_410--Hb_029142_060 Hb_004093_090 Hb_004093_090 Hb_000866_410--Hb_004093_090 Hb_000402_120 Hb_000402_120 Hb_012384_030--Hb_000402_120 Hb_001776_060 Hb_001776_060 Hb_012384_030--Hb_001776_060 Hb_003929_280 Hb_003929_280 Hb_012384_030--Hb_003929_280 Hb_012384_030--Hb_002217_110 Hb_003927_040 Hb_003927_040 Hb_012384_030--Hb_003927_040 Hb_004837_180 Hb_004837_180 Hb_002217_110--Hb_004837_180 Hb_000260_680 Hb_000260_680 Hb_002217_110--Hb_000260_680 Hb_001456_060 Hb_001456_060 Hb_002217_110--Hb_001456_060 Hb_002217_110--Hb_003929_280 Hb_002217_110--Hb_001776_060 Hb_008453_140--Hb_120410_010 Hb_010381_090 Hb_010381_090 Hb_008453_140--Hb_010381_090 Hb_003125_120 Hb_003125_120 Hb_008453_140--Hb_003125_120 Hb_001142_030 Hb_001142_030 Hb_008453_140--Hb_001142_030 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010 Hb_004116_060 Hb_004116_060 Hb_120410_010--Hb_004116_060 Hb_120410_010--Hb_001142_030 Hb_002530_030 Hb_002530_030 Hb_120410_010--Hb_002530_030 Hb_002740_030 Hb_002740_030 Hb_120410_010--Hb_002740_030 Hb_120410_010--Hb_010381_090 Hb_000453_050 Hb_000453_050 Hb_029142_060--Hb_000453_050 Hb_000866_010 Hb_000866_010 Hb_029142_060--Hb_000866_010 Hb_029142_060--Hb_004093_090 Hb_000260_100 Hb_000260_100 Hb_029142_060--Hb_000260_100 Hb_003994_200 Hb_003994_200 Hb_029142_060--Hb_003994_200 Hb_000610_010 Hb_000610_010 Hb_004093_090--Hb_000610_010 Hb_005588_030 Hb_005588_030 Hb_004093_090--Hb_005588_030 Hb_004093_090--Hb_120410_010 Hb_000959_210 Hb_000959_210 Hb_004093_090--Hb_000959_210 Hb_000362_200 Hb_000362_200 Hb_004093_090--Hb_000362_200 Hb_000009_530 Hb_000009_530 Hb_004093_090--Hb_000009_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.51786 2.2232 2.68362 1.4392 2.73691 2.16499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55981 2.70363 1.88879 1.21717 1.72908

CAGE analysis