Hb_000866_430

Information

Type transcription factor
Description TF Family: MYB
Location Contig866: 289447-291118
Sequence    

Annotation

kegg
ID rcu:RCOM_1614750
description r2r3-myb transcription factor, putative
nr
ID XP_012083427.1
description PREDICTED: transcription repressor MYB6 [Jatropha curcas]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID A0A067K0R8
description MYB family protein OS=Jatropha curcas GN=JCGZ_14424 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 308

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60993: 289311-290143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_430 0.0 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
2 Hb_007919_070 0.1187509911 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
3 Hb_027065_010 0.1349950689 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
4 Hb_116420_050 0.1368007559 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
5 Hb_000251_170 0.1417292988 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
6 Hb_001007_090 0.1572806919 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
7 Hb_155896_010 0.1585620799 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
8 Hb_004551_010 0.1650365682 - - tryptophan synthase beta chain, putative [Ricinus communis]
9 Hb_000134_260 0.1650990677 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
10 Hb_000140_250 0.1656243103 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
11 Hb_000256_180 0.1705856873 - - PREDICTED: uncharacterized protein LOC105637589 [Jatropha curcas]
12 Hb_000521_190 0.1726421428 desease resistance Gene Name: TIR hypothetical protein JCGZ_25500 [Jatropha curcas]
13 Hb_002311_160 0.1741322966 transcription factor TF Family: ARR-B sensor histidine kinase, putative [Ricinus communis]
14 Hb_014700_020 0.1757608273 - - tryptophan synthase beta chain, putative [Ricinus communis]
15 Hb_127372_010 0.1793259112 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
16 Hb_001361_010 0.1820584317 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
17 Hb_000035_140 0.1822285401 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
18 Hb_000042_020 0.1844634532 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
19 Hb_003207_220 0.184661348 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
20 Hb_107174_010 0.1851139366 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000866_430 Hb_000866_430 Hb_007919_070 Hb_007919_070 Hb_000866_430--Hb_007919_070 Hb_027065_010 Hb_027065_010 Hb_000866_430--Hb_027065_010 Hb_116420_050 Hb_116420_050 Hb_000866_430--Hb_116420_050 Hb_000251_170 Hb_000251_170 Hb_000866_430--Hb_000251_170 Hb_001007_090 Hb_001007_090 Hb_000866_430--Hb_001007_090 Hb_155896_010 Hb_155896_010 Hb_000866_430--Hb_155896_010 Hb_007919_070--Hb_000251_170 Hb_014700_020 Hb_014700_020 Hb_007919_070--Hb_014700_020 Hb_003935_050 Hb_003935_050 Hb_007919_070--Hb_003935_050 Hb_007919_070--Hb_116420_050 Hb_000349_170 Hb_000349_170 Hb_007919_070--Hb_000349_170 Hb_027065_010--Hb_116420_050 Hb_127372_010 Hb_127372_010 Hb_027065_010--Hb_127372_010 Hb_001361_010 Hb_001361_010 Hb_027065_010--Hb_001361_010 Hb_003207_220 Hb_003207_220 Hb_027065_010--Hb_003207_220 Hb_000042_020 Hb_000042_020 Hb_027065_010--Hb_000042_020 Hb_116420_050--Hb_127372_010 Hb_116420_050--Hb_003207_220 Hb_116420_050--Hb_000042_020 Hb_000251_170--Hb_014700_020 Hb_002999_150 Hb_002999_150 Hb_000251_170--Hb_002999_150 Hb_000251_170--Hb_155896_010 Hb_000251_170--Hb_003207_220 Hb_009421_090 Hb_009421_090 Hb_000251_170--Hb_009421_090 Hb_008878_010 Hb_008878_010 Hb_001007_090--Hb_008878_010 Hb_000521_190 Hb_000521_190 Hb_001007_090--Hb_000521_190 Hb_000134_260 Hb_000134_260 Hb_001007_090--Hb_000134_260 Hb_176472_020 Hb_176472_020 Hb_001007_090--Hb_176472_020 Hb_001007_090--Hb_116420_050 Hb_000069_530 Hb_000069_530 Hb_155896_010--Hb_000069_530 Hb_005381_010 Hb_005381_010 Hb_155896_010--Hb_005381_010 Hb_006615_060 Hb_006615_060 Hb_155896_010--Hb_006615_060 Hb_077694_010 Hb_077694_010 Hb_155896_010--Hb_077694_010 Hb_155896_010--Hb_127372_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.237139 4.6219 10.9154 1.38382 0.0227866 0.0214346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.167233 0.131518 0 0.0176642 0.713364

CAGE analysis