Hb_000866_450

Information

Type -
Description -
Location Contig866: 310322-316633
Sequence    

Annotation

kegg
ID rcu:RCOM_1614640
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_002511831.1
description dead box ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q8RXK6
description DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1
trembl
ID B9RDP2
description Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1614640 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60994: 310379-316400 , PASA_asmbl_60995: 311248-311486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_450 0.0 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_000809_160 0.0587427485 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
3 Hb_005288_140 0.0604148029 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
4 Hb_000094_090 0.0746714512 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
5 Hb_102438_030 0.0746883825 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
6 Hb_001245_050 0.07484225 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
7 Hb_000723_110 0.0757380206 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
8 Hb_009449_060 0.0761342197 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
9 Hb_004319_050 0.0773850609 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
10 Hb_000300_550 0.0784673036 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
11 Hb_023226_070 0.078928469 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001699_010 0.0821387849 - - drought-inducible protein [Manihot esculenta]
13 Hb_005322_050 0.0822349461 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
14 Hb_002477_250 0.0830641249 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
15 Hb_000120_910 0.0836942241 - - plant ubiquilin, putative [Ricinus communis]
16 Hb_002811_040 0.0845282332 - - 5'->3' exoribonuclease, putative [Ricinus communis]
17 Hb_030545_030 0.0847558019 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
18 Hb_000048_080 0.0850613857 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
19 Hb_007017_070 0.085280535 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
20 Hb_027654_020 0.0855639152 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_450 Hb_000866_450 Hb_000809_160 Hb_000809_160 Hb_000866_450--Hb_000809_160 Hb_005288_140 Hb_005288_140 Hb_000866_450--Hb_005288_140 Hb_000094_090 Hb_000094_090 Hb_000866_450--Hb_000094_090 Hb_102438_030 Hb_102438_030 Hb_000866_450--Hb_102438_030 Hb_001245_050 Hb_001245_050 Hb_000866_450--Hb_001245_050 Hb_000723_110 Hb_000723_110 Hb_000866_450--Hb_000723_110 Hb_000809_160--Hb_000094_090 Hb_002477_250 Hb_002477_250 Hb_000809_160--Hb_002477_250 Hb_031641_010 Hb_031641_010 Hb_000809_160--Hb_031641_010 Hb_000120_910 Hb_000120_910 Hb_000809_160--Hb_000120_910 Hb_000363_120 Hb_000363_120 Hb_000809_160--Hb_000363_120 Hb_004319_050 Hb_004319_050 Hb_005288_140--Hb_004319_050 Hb_026198_060 Hb_026198_060 Hb_005288_140--Hb_026198_060 Hb_000174_150 Hb_000174_150 Hb_005288_140--Hb_000174_150 Hb_005403_010 Hb_005403_010 Hb_005288_140--Hb_005403_010 Hb_033152_090 Hb_033152_090 Hb_005288_140--Hb_033152_090 Hb_000094_090--Hb_000363_120 Hb_000094_090--Hb_000723_110 Hb_000373_230 Hb_000373_230 Hb_000094_090--Hb_000373_230 Hb_023226_070 Hb_023226_070 Hb_000094_090--Hb_023226_070 Hb_004870_050 Hb_004870_050 Hb_000094_090--Hb_004870_050 Hb_030545_030 Hb_030545_030 Hb_102438_030--Hb_030545_030 Hb_000102_050 Hb_000102_050 Hb_102438_030--Hb_000102_050 Hb_004032_230 Hb_004032_230 Hb_102438_030--Hb_004032_230 Hb_007017_070 Hb_007017_070 Hb_102438_030--Hb_007017_070 Hb_000958_150 Hb_000958_150 Hb_102438_030--Hb_000958_150 Hb_000139_320 Hb_000139_320 Hb_102438_030--Hb_000139_320 Hb_003777_110 Hb_003777_110 Hb_001245_050--Hb_003777_110 Hb_006452_180 Hb_006452_180 Hb_001245_050--Hb_006452_180 Hb_000115_340 Hb_000115_340 Hb_001245_050--Hb_000115_340 Hb_000375_290 Hb_000375_290 Hb_001245_050--Hb_000375_290 Hb_000120_030 Hb_000120_030 Hb_001245_050--Hb_000120_030 Hb_000723_110--Hb_007017_070 Hb_000926_010 Hb_000926_010 Hb_000723_110--Hb_000926_010 Hb_000723_110--Hb_000809_160 Hb_004410_070 Hb_004410_070 Hb_000723_110--Hb_004410_070 Hb_000723_110--Hb_000373_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.09 58.2315 51.1347 38.8428 28.1338 21.6336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0843 19.3319 15.0271 20.6456 21.4081

CAGE analysis