Hb_000868_060

Information

Type -
Description -
Location Contig868: 119108-136248
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14870g
description POPTRDRAFT_723872; hypothetical protein
nr
ID XP_012066449.1
description PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
swissprot
ID Q96JB2
description Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3 PE=1 SV=3
trembl
ID A0A067L2S6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23642 PE=4 SV=1
Gene Ontology
ID GO:0005794
description conserved oligomeric golgi complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61043: 116159-118194 , PASA_asmbl_61044: 127733-129904 , PASA_asmbl_61045: 130303-131613 , PASA_asmbl_61046: 131653-135942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000868_060 0.0 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
2 Hb_002888_070 0.0521189005 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
3 Hb_000395_020 0.0581844346 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
4 Hb_001050_010 0.0650220395 - - Advillin [Gossypium arboreum]
5 Hb_001102_080 0.0705987887 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
6 Hb_001085_320 0.0720596569 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
7 Hb_001040_040 0.0733270905 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
8 Hb_000480_010 0.0737157523 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011609_170 0.0769457378 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
10 Hb_000002_490 0.0811257515 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
11 Hb_011174_090 0.0827674292 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
12 Hb_001454_320 0.0828737334 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
13 Hb_000009_480 0.083402789 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
14 Hb_000648_100 0.0840986525 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
15 Hb_007558_120 0.0841258337 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
16 Hb_000270_460 0.0848833407 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
17 Hb_002942_050 0.084981274 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
18 Hb_003126_100 0.085627911 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
19 Hb_000189_330 0.0865928428 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
20 Hb_003680_230 0.0873665421 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]

Gene co-expression network

sample Hb_000868_060 Hb_000868_060 Hb_002888_070 Hb_002888_070 Hb_000868_060--Hb_002888_070 Hb_000395_020 Hb_000395_020 Hb_000868_060--Hb_000395_020 Hb_001050_010 Hb_001050_010 Hb_000868_060--Hb_001050_010 Hb_001102_080 Hb_001102_080 Hb_000868_060--Hb_001102_080 Hb_001085_320 Hb_001085_320 Hb_000868_060--Hb_001085_320 Hb_001040_040 Hb_001040_040 Hb_000868_060--Hb_001040_040 Hb_003126_100 Hb_003126_100 Hb_002888_070--Hb_003126_100 Hb_000480_010 Hb_000480_010 Hb_002888_070--Hb_000480_010 Hb_000914_080 Hb_000914_080 Hb_002888_070--Hb_000914_080 Hb_002888_070--Hb_001102_080 Hb_011930_080 Hb_011930_080 Hb_002888_070--Hb_011930_080 Hb_000523_050 Hb_000523_050 Hb_000395_020--Hb_000523_050 Hb_000395_020--Hb_001040_040 Hb_003813_040 Hb_003813_040 Hb_000395_020--Hb_003813_040 Hb_000395_020--Hb_001050_010 Hb_002078_020 Hb_002078_020 Hb_000395_020--Hb_002078_020 Hb_000002_490 Hb_000002_490 Hb_001050_010--Hb_000002_490 Hb_011915_010 Hb_011915_010 Hb_001050_010--Hb_011915_010 Hb_001900_120 Hb_001900_120 Hb_001050_010--Hb_001900_120 Hb_011609_170 Hb_011609_170 Hb_001050_010--Hb_011609_170 Hb_001102_080--Hb_000480_010 Hb_007044_040 Hb_007044_040 Hb_001102_080--Hb_007044_040 Hb_000270_460 Hb_000270_460 Hb_001102_080--Hb_000270_460 Hb_018790_070 Hb_018790_070 Hb_001102_080--Hb_018790_070 Hb_030131_040 Hb_030131_040 Hb_001085_320--Hb_030131_040 Hb_000059_140 Hb_000059_140 Hb_001085_320--Hb_000059_140 Hb_015763_030 Hb_015763_030 Hb_001085_320--Hb_015763_030 Hb_007558_120 Hb_007558_120 Hb_001085_320--Hb_007558_120 Hb_001454_320 Hb_001454_320 Hb_001085_320--Hb_001454_320 Hb_001040_040--Hb_011915_010 Hb_000923_040 Hb_000923_040 Hb_001040_040--Hb_000923_040 Hb_009252_100 Hb_009252_100 Hb_001040_040--Hb_009252_100 Hb_030827_030 Hb_030827_030 Hb_001040_040--Hb_030827_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4149 8.72391 11.3099 8.70859 18.3187 16.4461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.54825 4.13566 6.37535 9.06363 4.34774

CAGE analysis