Hb_000868_090

Information

Type transcription factor
Description TF Family: ARID
Location Contig868: 160995-169345
Sequence    

Annotation

kegg
ID rcu:RCOM_0708750
description DNA binding protein, putative
nr
ID XP_012077118.1
description PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
swissprot
ID Q6NQ79
description AT-rich interactive domain-containing protein 4 OS=Arabidopsis thaliana GN=ARID4 PE=2 SV=1
trembl
ID A0A067KG32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07539 PE=4 SV=1
Gene Ontology
ID GO:0003677
description at-rich interactive domain-containing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61047: 160899-169319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000868_090 0.0 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
2 Hb_007765_110 0.058543628 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
3 Hb_019863_070 0.0593101435 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
4 Hb_002818_030 0.0634324252 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
5 Hb_003464_090 0.0646577347 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
6 Hb_000318_250 0.064956247 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
7 Hb_003906_200 0.0650174124 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
8 Hb_004324_130 0.066596153 - - polypyrimidine tract binding protein, putative [Ricinus communis]
9 Hb_001396_200 0.0673129834 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
10 Hb_002234_090 0.0685210941 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
11 Hb_000732_010 0.0686189049 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
12 Hb_003849_110 0.0693745484 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
13 Hb_001205_240 0.0713448239 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
14 Hb_000069_310 0.0723128901 - - ubiquitin ligase [Cucumis melo subsp. melo]
15 Hb_008725_230 0.0728526272 - - PREDICTED: CTP synthase [Jatropha curcas]
16 Hb_112198_010 0.0745839058 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
17 Hb_033772_030 0.0752472798 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
18 Hb_000710_060 0.0753830964 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
19 Hb_001359_050 0.0767647691 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002026_210 0.0768559234 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]

Gene co-expression network

sample Hb_000868_090 Hb_000868_090 Hb_007765_110 Hb_007765_110 Hb_000868_090--Hb_007765_110 Hb_019863_070 Hb_019863_070 Hb_000868_090--Hb_019863_070 Hb_002818_030 Hb_002818_030 Hb_000868_090--Hb_002818_030 Hb_003464_090 Hb_003464_090 Hb_000868_090--Hb_003464_090 Hb_000318_250 Hb_000318_250 Hb_000868_090--Hb_000318_250 Hb_003906_200 Hb_003906_200 Hb_000868_090--Hb_003906_200 Hb_007765_110--Hb_003464_090 Hb_007163_120 Hb_007163_120 Hb_007765_110--Hb_007163_120 Hb_033772_030 Hb_033772_030 Hb_007765_110--Hb_033772_030 Hb_003370_030 Hb_003370_030 Hb_007765_110--Hb_003370_030 Hb_011491_010 Hb_011491_010 Hb_007765_110--Hb_011491_010 Hb_019863_070--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_019863_070--Hb_003849_110 Hb_005054_110 Hb_005054_110 Hb_019863_070--Hb_005054_110 Hb_000258_160 Hb_000258_160 Hb_019863_070--Hb_000258_160 Hb_015807_150 Hb_015807_150 Hb_019863_070--Hb_015807_150 Hb_004916_010 Hb_004916_010 Hb_002818_030--Hb_004916_010 Hb_002818_030--Hb_003849_110 Hb_000049_260 Hb_000049_260 Hb_002818_030--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002818_030--Hb_002798_070 Hb_000069_310 Hb_000069_310 Hb_002818_030--Hb_000069_310 Hb_003464_090--Hb_007163_120 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_001546_080 Hb_001546_080 Hb_000318_250--Hb_001546_080 Hb_000130_410 Hb_000130_410 Hb_000318_250--Hb_000130_410 Hb_000732_010 Hb_000732_010 Hb_000318_250--Hb_000732_010 Hb_000317_050 Hb_000317_050 Hb_000318_250--Hb_000317_050 Hb_000329_710 Hb_000329_710 Hb_000318_250--Hb_000329_710 Hb_112198_010 Hb_112198_010 Hb_003906_200--Hb_112198_010 Hb_002492_010 Hb_002492_010 Hb_003906_200--Hb_002492_010 Hb_004143_100 Hb_004143_100 Hb_003906_200--Hb_004143_100 Hb_001473_160 Hb_001473_160 Hb_003906_200--Hb_001473_160 Hb_000072_120 Hb_000072_120 Hb_003906_200--Hb_000072_120 Hb_003544_060 Hb_003544_060 Hb_003906_200--Hb_003544_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.10497 16.6404 8.3746 11.5827 9.54577 9.21063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4563 11.5682 12.1567 12.4527 10.7271

CAGE analysis