Hb_000868_100

Information

Type -
Description -
Location Contig868: 172397-181052
Sequence    

Annotation

kegg
ID rcu:RCOM_0708770
description zinc finger protein, putative
nr
ID XP_012077123.1
description PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
swissprot
ID P50876
description E3 ubiquitin-protein ligase RNF144A OS=Homo sapiens GN=RNF144A PE=1 SV=2
trembl
ID A0A067KNU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07541 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase rnf217

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61048: 176349-176733 , PASA_asmbl_61049: 176741-176871 , PASA_asmbl_61050: 179203-179916 , PASA_asmbl_61051: 179925-180550 , PASA_asmbl_61052: 180599-180818
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000868_100 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
2 Hb_000671_170 0.1384998536 - - kinase, putative [Ricinus communis]
3 Hb_000694_060 0.156105191 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
4 Hb_000671_160 0.1622911781 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
5 Hb_008173_030 0.1722327547 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
6 Hb_004460_050 0.1886924729 - - chaperone protein DNAj, putative [Ricinus communis]
7 Hb_000049_240 0.2017832818 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
8 Hb_001113_030 0.2090624686 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
9 Hb_088753_010 0.2142058196 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
10 Hb_031527_060 0.2144447407 - - glutamate decarboxylase, putative [Ricinus communis]
11 Hb_002686_120 0.21781896 - - short-chain type dehydrogenase, putative [Ricinus communis]
12 Hb_031862_040 0.219072988 - - purine transporter, putative [Ricinus communis]
13 Hb_000402_210 0.2195382132 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
14 Hb_002374_380 0.2209887724 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
15 Hb_000948_080 0.2234452991 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
16 Hb_000891_030 0.2235456459 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
17 Hb_000672_150 0.2242690097 - - Patatin T5 precursor, putative [Ricinus communis]
18 Hb_001049_020 0.2276889262 - - conserved hypothetical protein [Ricinus communis]
19 Hb_028707_070 0.2282825927 - - short-chain dehydrogenase, putative [Ricinus communis]
20 Hb_007317_080 0.2288744633 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]

Gene co-expression network

sample Hb_000868_100 Hb_000868_100 Hb_000671_170 Hb_000671_170 Hb_000868_100--Hb_000671_170 Hb_000694_060 Hb_000694_060 Hb_000868_100--Hb_000694_060 Hb_000671_160 Hb_000671_160 Hb_000868_100--Hb_000671_160 Hb_008173_030 Hb_008173_030 Hb_000868_100--Hb_008173_030 Hb_004460_050 Hb_004460_050 Hb_000868_100--Hb_004460_050 Hb_000049_240 Hb_000049_240 Hb_000868_100--Hb_000049_240 Hb_000671_170--Hb_000671_160 Hb_000672_150 Hb_000672_150 Hb_000671_170--Hb_000672_150 Hb_001959_120 Hb_001959_120 Hb_000671_170--Hb_001959_120 Hb_001113_030 Hb_001113_030 Hb_000671_170--Hb_001113_030 Hb_000671_170--Hb_008173_030 Hb_002374_380 Hb_002374_380 Hb_000694_060--Hb_002374_380 Hb_007017_010 Hb_007017_010 Hb_000694_060--Hb_007017_010 Hb_008948_120 Hb_008948_120 Hb_000694_060--Hb_008948_120 Hb_000948_080 Hb_000948_080 Hb_000694_060--Hb_000948_080 Hb_002236_050 Hb_002236_050 Hb_000694_060--Hb_002236_050 Hb_002284_190 Hb_002284_190 Hb_000671_160--Hb_002284_190 Hb_000671_160--Hb_000694_060 Hb_002660_060 Hb_002660_060 Hb_000671_160--Hb_002660_060 Hb_002805_020 Hb_002805_020 Hb_000671_160--Hb_002805_020 Hb_002110_240 Hb_002110_240 Hb_008173_030--Hb_002110_240 Hb_000649_240 Hb_000649_240 Hb_008173_030--Hb_000649_240 Hb_000343_180 Hb_000343_180 Hb_008173_030--Hb_000343_180 Hb_002205_010 Hb_002205_010 Hb_008173_030--Hb_002205_010 Hb_000638_210 Hb_000638_210 Hb_008173_030--Hb_000638_210 Hb_000160_240 Hb_000160_240 Hb_004460_050--Hb_000160_240 Hb_000260_290 Hb_000260_290 Hb_004460_050--Hb_000260_290 Hb_004460_050--Hb_000694_060 Hb_031527_060 Hb_031527_060 Hb_004460_050--Hb_031527_060 Hb_001117_070 Hb_001117_070 Hb_004460_050--Hb_001117_070 Hb_002675_200 Hb_002675_200 Hb_000049_240--Hb_002675_200 Hb_007425_020 Hb_007425_020 Hb_000049_240--Hb_007425_020 Hb_000049_240--Hb_000671_170 Hb_003687_030 Hb_003687_030 Hb_000049_240--Hb_003687_030 Hb_000049_240--Hb_000694_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.3565 7.76404 1.00691 1.9376 0.1265 0.261932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53151 7.24286 1.96529 4.95908 0.932185

CAGE analysis