Hb_000869_030

Information

Type transcription factor
Description TF Family: Pseudo ARR-B
Location Contig869: 21001-27014
Sequence    

Annotation

kegg
ID rcu:RCOM_0969830
description hypothetical protein
nr
ID XP_012080916.1
description PREDICTED: two-component response regulator-like APRR5 isoform X1 [Jatropha curcas]
swissprot
ID Q6LA42
description Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2
trembl
ID A0A067LM89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17077 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator-like aprr5 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61077: 21058-26219 , PASA_asmbl_61079: 26353-26532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000869_030 0.0 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR5 isoform X1 [Jatropha curcas]
2 Hb_002073_280 0.111534477 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
3 Hb_128695_030 0.1139078536 - - heat shock protein, putative [Ricinus communis]
4 Hb_012082_010 0.1212149947 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
5 Hb_003895_020 0.1249312301 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
6 Hb_003992_180 0.1256403889 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
7 Hb_000086_050 0.1265030255 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
8 Hb_000345_490 0.1303506779 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
9 Hb_002942_110 0.1315647958 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
10 Hb_003089_030 0.1318361895 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
11 Hb_096819_010 0.1331424058 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
12 Hb_012305_140 0.1332490966 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
13 Hb_155159_010 0.1333669588 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
14 Hb_002282_060 0.1340093425 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
15 Hb_000024_120 0.1356708929 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
16 Hb_005610_080 0.1395450545 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000227_310 0.1403597805 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
18 Hb_007576_220 0.1408937391 - - PREDICTED: kanadaptin [Jatropha curcas]
19 Hb_000625_120 0.141834654 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
20 Hb_007017_070 0.1424640615 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000869_030 Hb_000869_030 Hb_002073_280 Hb_002073_280 Hb_000869_030--Hb_002073_280 Hb_128695_030 Hb_128695_030 Hb_000869_030--Hb_128695_030 Hb_012082_010 Hb_012082_010 Hb_000869_030--Hb_012082_010 Hb_003895_020 Hb_003895_020 Hb_000869_030--Hb_003895_020 Hb_003992_180 Hb_003992_180 Hb_000869_030--Hb_003992_180 Hb_000086_050 Hb_000086_050 Hb_000869_030--Hb_000086_050 Hb_002282_060 Hb_002282_060 Hb_002073_280--Hb_002282_060 Hb_013749_020 Hb_013749_020 Hb_002073_280--Hb_013749_020 Hb_007576_220 Hb_007576_220 Hb_002073_280--Hb_007576_220 Hb_155159_010 Hb_155159_010 Hb_002073_280--Hb_155159_010 Hb_000526_060 Hb_000526_060 Hb_002073_280--Hb_000526_060 Hb_000896_060 Hb_000896_060 Hb_002073_280--Hb_000896_060 Hb_000056_300 Hb_000056_300 Hb_128695_030--Hb_000056_300 Hb_178127_010 Hb_178127_010 Hb_128695_030--Hb_178127_010 Hb_001565_020 Hb_001565_020 Hb_128695_030--Hb_001565_020 Hb_002942_110 Hb_002942_110 Hb_128695_030--Hb_002942_110 Hb_005054_310 Hb_005054_310 Hb_128695_030--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_128695_030--Hb_000836_370 Hb_044653_020 Hb_044653_020 Hb_012082_010--Hb_044653_020 Hb_002485_040 Hb_002485_040 Hb_012082_010--Hb_002485_040 Hb_012082_010--Hb_000896_060 Hb_003018_040 Hb_003018_040 Hb_012082_010--Hb_003018_040 Hb_000218_020 Hb_000218_020 Hb_012082_010--Hb_000218_020 Hb_000130_280 Hb_000130_280 Hb_012082_010--Hb_000130_280 Hb_000866_080 Hb_000866_080 Hb_003895_020--Hb_000866_080 Hb_004324_060 Hb_004324_060 Hb_003895_020--Hb_004324_060 Hb_001221_090 Hb_001221_090 Hb_003895_020--Hb_001221_090 Hb_030545_030 Hb_030545_030 Hb_003895_020--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_003895_020--Hb_002903_140 Hb_003895_020--Hb_155159_010 Hb_003992_180--Hb_030545_030 Hb_006615_030 Hb_006615_030 Hb_003992_180--Hb_006615_030 Hb_012305_140 Hb_012305_140 Hb_003992_180--Hb_012305_140 Hb_004526_010 Hb_004526_010 Hb_003992_180--Hb_004526_010 Hb_001558_060 Hb_001558_060 Hb_003992_180--Hb_001558_060 Hb_005694_130 Hb_005694_130 Hb_003992_180--Hb_005694_130 Hb_009449_090 Hb_009449_090 Hb_000086_050--Hb_009449_090 Hb_007283_030 Hb_007283_030 Hb_000086_050--Hb_007283_030 Hb_000086_050--Hb_007576_220 Hb_002687_090 Hb_002687_090 Hb_000086_050--Hb_002687_090 Hb_007576_230 Hb_007576_230 Hb_000086_050--Hb_007576_230 Hb_000086_050--Hb_155159_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.60801 29.863 17.8892 5.43836 11.0791 13.3616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.49787 1.42536 6.31167 5.94931 9.61556

CAGE analysis